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LC644973.1__BCZ75884.1__X__00024

Bact-Vir

LC644973.1__BCZ75884.1__X__00024

Identity

Accession:
LC644973 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-56
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8c9vA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 53.0 3.61e-01 100.0% 23.2%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.66 56.0 3.99e-01 100.0% 48.4%
2g1pB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 41.0 2.94e-01 100.0% 21.9%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.62e-01 100.0% 61.0%
3c3pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 45.0 3.10e-01 100.0% 20.2%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.60 46.0 4.04e-01 100.0% 53.8%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 3.92e-01 100.0% 42.0%
2gpyB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 40.0 2.74e-01 100.0% 17.7%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.60 44.0 4.05e-01 100.0% 57.7%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.02e-01 100.0% 46.1%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.24e-01 100.0% 23.1%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 46.0 4.03e-01 100.0% 54.1%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.59 49.0 3.73e-01 100.0% 67.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.25e-01 100.0% 62.9%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 48.0 3.44e-01 100.0% 32.1%
5x7fA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 46.0 3.17e-01 100.0% 23.2%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 3.93e-01 100.0% 46.4%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.42e-01 100.0% 29.5%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 47.0 3.92e-01 100.0% 50.5%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.57 47.0 3.54e-01 100.0% 88.6%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.91e-01 100.0% 58.1%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.57 45.0 3.24e-01 100.0% 28.4%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.07e-01 100.0% 27.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.83e-01 100.0% 48.6%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.85e-01 100.0% 63.1%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.56 48.0 4.30e-01 100.0% 70.8%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 3.07e-01 100.0% 24.2%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 47.0 2.62e-01 100.0% 6.8%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 45.0 3.05e-01 100.0% 34.3%
7kjhC01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.52e-01 100.0% 48.4%
1olzA02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.54 33.0 3.16e-01 93.9% 52.6%
4p27A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 43.0 3.22e-01 100.0% 43.9%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.46e-01 100.0% 57.5%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 44.0 3.31e-01 100.0% 60.3%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 40.0 3.10e-01 100.0% 32.8%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.15e-01 100.0% 61.0%
2oaaB01 3.40.210.20 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain 0.53 43.0 3.50e-01 100.0% 63.9%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.52 38.0 3.07e-01 100.0% 37.7%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 2.90e-01 100.0% 23.8%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.53e-01 100.0% 54.0%
4bsjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.37e-01 100.0% 51.2%
1vr4E00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.51 42.0 3.55e-01 100.0% 75.3%
2c43A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 42.0 3.15e-01 100.0% 74.1%
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.51 37.0 3.82e-01 79.6% 100.0%
4anoA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 40.0 2.70e-01 100.0% 21.5%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.51e-01 100.0% 51.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.41e-01 100.0% 50.5%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.50 42.0 3.36e-01 100.0% 66.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 4.68e-01 98.0% 53.8%
3879109 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 50.0 3.97e-01 100.0% 38.5%
5011969 304.115.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in DAHP synthase › Ferredoxin-like domain in DAHP synthase 0.66 49.0 4.63e-01 100.0% 66.7%
3861907 3246.1.1.1 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.66 43.0 3.32e-01 100.0% 28.3%
5023381 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 57.0 5.00e-01 100.0% 94.7%
1883358 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.64 52.0 4.84e-01 100.0% 71.0%
4941640 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 45.0 3.22e-01 98.0% 24.5%
4479016 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.63 47.0 3.72e-01 100.0% 37.3%
166907 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.63 45.0 3.10e-01 100.0% 20.2%
4976098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.63e-01 100.0% 67.1%
3960673 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 55.0 5.02e-01 100.0% 80.0%
3723914 327.11.2.40 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 0.61 47.0 4.31e-01 100.0% 64.6%
3624494 4012.4.1.0 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.60 46.0 4.74e-01 100.0% 93.3%
3693280 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.60 49.0 4.06e-01 100.0% 49.5%
5031473 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 53.0 4.12e-01 100.0% 50.5%
None 0.59 49.0 3.25e-01 100.0% 23.1%
3848736 3246.1.1.1 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.59 39.0 3.05e-01 100.0% 28.3%
5013819 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.58 47.0 4.26e-01 100.0% 66.2%
5040376 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.58 52.0 3.92e-01 100.0% 47.8%
3784677 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.58 50.0 3.27e-01 100.0% 24.5%
4991742 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 50.0 3.71e-01 100.0% 42.3%
3831895 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.58 49.0 3.10e-01 100.0% 18.9%
4010862 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.57 45.0 3.46e-01 89.8% 37.4%
3666825 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.57 48.0 3.80e-01 100.0% 47.3%
3215582 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 49.0 3.69e-01 100.0% 44.8%
3319155 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.56 48.0 3.02e-01 100.0% 18.6%
5020125 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 45.0 4.00e-01 98.0% 61.4%
4087209 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.56 45.0 3.85e-01 100.0% 55.0%
4985048 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.56 38.0 3.40e-01 100.0% 46.3%
5040732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 3.77e-01 100.0% 53.6%
4970273 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.55 38.0 3.25e-01 100.0% 41.1%
3785319 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.55 38.0 3.29e-01 75.5% 70.6%
4168395 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.55 48.0 3.65e-01 100.0% 66.7%
3940708 4012.4.1.1 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain › DPAGT1_ins 0.54 40.0 4.15e-01 100.0% 93.3%
5043867 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.54 39.0 3.52e-01 100.0% 53.3%
3223903 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 49.0 4.03e-01 100.0% 57.6%
5036173 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.54 44.0 2.99e-01 98.0% 35.2%
4201421 3156.3.1.0 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.54 45.0 3.38e-01 100.0% 48.9%
3892942 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 42.0 4.23e-01 87.8% 98.0%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 46.0 3.17e-01 100.0% 30.6%
5056891 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.46e-01 100.0% 39.2%
2892409 3156.3.1.2 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 0.53 44.0 3.32e-01 100.0% 43.5%
4023757 3156.3.1.2 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 0.53 44.0 3.31e-01 100.0% 42.9%
5035779 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 45.0 3.48e-01 100.0% 44.2%
3737595 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.53 45.0 2.91e-01 100.0% 23.9%
3831660 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 45.0 3.28e-01 100.0% 61.4%
5048446 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.95e-01 100.0% 70.6%
4031587 225.1.1.9 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_5 0.51 43.0 3.15e-01 100.0% 61.7%
1157008 716.1.1.2 beta duplicates or obligate multimers › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Trp_ring 0.50 39.0 3.77e-01 81.6% 94.4%
3427866 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 42.0 3.89e-01 98.0% 76.9%
4889833 206.1.1.27 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › YukC 0.50 38.0 2.64e-01 100.0% 20.7%