←Back to structures

LC644973.1__BCZ75889.1__X__00029

Bact-Vir

LC644973.1__BCZ75889.1__X__00029

Identity

Accession:
LC644973 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acetobacter_phage_phiAX1

TaxID: 2860314

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.88 39.0 2.48e-01 88.7% 10.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.85 36.0 3.07e-01 86.8% 27.5%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.84 41.0 3.27e-01 90.6% 27.7%
3iwgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.74 37.0 2.66e-01 92.5% 18.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.72 47.0 4.25e-01 71.7% 48.0%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.68 42.0 2.56e-01 100.0% 10.7%
3ibjA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 55.0 3.88e-01 100.0% 36.4%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.63 45.0 3.54e-01 77.4% 34.5%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 44.0 2.70e-01 73.6% 94.9%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 45.0 3.80e-01 79.2% 64.5%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 43.0 3.16e-01 73.6% 31.0%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 46.0 3.54e-01 84.9% 46.7%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 47.0 3.39e-01 96.2% 79.3%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 43.0 2.62e-01 79.2% 69.9%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 38.0 2.56e-01 73.6% 15.8%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.88e-01 100.0% 56.4%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 41.0 3.05e-01 77.4% 35.6%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 41.0 3.35e-01 79.2% 57.8%
2kt9A01 3.30.390.140 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 37.0 3.08e-01 71.7% 36.4%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 36.0 2.76e-01 77.4% 25.2%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 40.0 3.25e-01 77.4% 44.1%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.55 42.0 3.44e-01 81.1% 48.4%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 2.86e-01 75.5% 29.5%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.54 33.0 2.73e-01 86.8% 30.3%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.54 39.0 2.87e-01 83.0% 61.8%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.00e-01 73.6% 39.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.45e-01 81.1% 97.6%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 40.0 2.52e-01 84.9% 70.9%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 39.0 3.26e-01 84.9% 57.1%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.53 36.0 2.59e-01 75.5% 83.6%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.51 38.0 2.74e-01 81.1% 81.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 43.0 3.13e-01 100.0% 47.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622764 4154.1.1.2 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F_CC-MB 0.80 40.0 3.14e-01 92.5% 25.7%
3769782 263.1.1.4 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.79 34.0 3.06e-01 83.0% 29.4%
3487326 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.79 39.0 3.66e-01 92.5% 40.0%
3685389 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.76 43.0 2.83e-01 94.3% 16.2%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 44.0 3.42e-01 71.7% 30.0%
4431434 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.66 55.0 3.98e-01 100.0% 34.1%
5018419 2484.1.1.139 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.64 47.0 3.07e-01 79.2% 45.5%
4028495 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 50.0 3.09e-01 86.8% 36.1%
3939569 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.64 46.0 3.96e-01 77.4% 69.4%
4951143 295.1.1.53 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.63 43.0 4.30e-01 71.7% 76.4%
3938884 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 45.0 3.66e-01 77.4% 56.2%
3490957 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 44.0 3.95e-01 73.6% 52.0%
3616441 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 47.0 3.69e-01 83.0% 55.0%
5051838 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.62 43.0 3.21e-01 73.6% 30.4%
1559028 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 46.0 3.54e-01 84.9% 46.7%
3767941 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.61 43.0 3.38e-01 79.2% 50.8%
4213219 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.61 44.0 2.47e-01 81.1% 40.3%
3401290 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 48.0 3.78e-01 88.7% 55.8%
4214888 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.60 49.0 3.96e-01 90.6% 83.0%
3586391 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.59 50.0 3.18e-01 100.0% 67.1%
4640369 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 50.0 4.09e-01 100.0% 67.6%
4029815 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.24e-01 77.4% 46.2%
3621690 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 50.0 4.10e-01 100.0% 95.2%
4997962 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.58 45.0 2.89e-01 84.9% 18.5%
3174442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 3.01e-01 90.6% 58.8%
5034597 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 38.0 2.89e-01 71.7% 26.9%
None — 0.56 43.0 2.42e-01 88.7% 39.3%
3937910 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 39.0 3.52e-01 79.2% 71.8%
3997875 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 2.72e-01 86.8% 26.8%
3515632 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 46.0 3.70e-01 100.0% 81.7%
5052007 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.55 48.0 3.04e-01 100.0% 76.2%
3655782 101.1.2.598 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.55 47.0 2.96e-01 96.2% 27.2%
3934023 3343.1.1.1 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal 0.55 45.0 2.61e-01 100.0% 25.7%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.54 39.0 3.26e-01 77.4% 43.2%
3270014 5.1.4.223 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.54 42.0 2.57e-01 96.2% 25.5%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 36.0 2.94e-01 71.7% 36.4%
4233828 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.54 38.0 3.21e-01 75.5% 45.3%
3717169 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.53 47.0 3.13e-01 98.1% 92.0%
3998368 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 37.0 2.77e-01 77.4% 62.9%
3938203 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 46.0 2.83e-01 98.1% 17.7%
4260212 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.52 40.0 3.20e-01 92.5% 53.1%
5066083 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 38.0 2.66e-01 84.9% 21.5%
4025162 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 35.0 3.10e-01 81.1% 45.3%