←Back to structures

LC644973.1__BCZ75912.1__X__00052

Bact-Vir

LC644973.1__BCZ75912.1__X__00052

Identity

Accession:
LC644973 ↗
Kingdom:
phage

Quality

58.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acetobacter_phage_phiAX1

TaxID: 2860314

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-116
PDB
Domain cluster: rep: MZ326863.1__QYW02339.1__CPT_Paku_045__00045__D5-122
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 62.8 3.20e-17 94.7% 83.8%
D2 medium residues 414-464
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.56 32.0 3.63e-01 84.3% 72.2%
3sghA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 2.62e-01 96.1% 43.8%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 46.0 2.80e-01 98.0% 18.9%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 41.0 3.40e-01 86.3% 77.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 40.0 3.18e-01 86.3% 65.1%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 2.95e-01 100.0% 64.1%
1knzA02 3.30.70.1610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.53e-01 80.4% 71.2%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 2.77e-01 100.0% 35.4%
6sj3B01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 39.0 2.52e-01 96.1% 77.3%
1jndA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 41.0 2.65e-01 100.0% 43.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4141047 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.62 43.0 2.79e-01 74.5% 90.0%
3174487 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.62 43.0 2.64e-01 74.5% 92.7%
5078448 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 42.0 3.28e-01 86.3% 90.0%
3219908 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.53 46.0 3.20e-01 98.0% 35.9%
3414279 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.53 42.0 2.83e-01 92.2% 90.2%
5020801 7523.1.1.43 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like 0.52 43.0 3.35e-01 100.0% 95.4%
3406351 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 41.0 3.21e-01 86.3% 66.4%
3641739 376.1.3.6 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW 0.51 30.0 3.02e-01 72.5% 50.9%
3896583 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.50 41.0 2.94e-01 100.0% 44.0%
D3 medium residues 481-550_565-652
PDB
Domain cluster: rep: KJ395778.1__AHJ87862.1__PVA1_25__00009__D326-470
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dfkC01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.64 50.0 4.57e-01 82.3% 95.3%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 4.65e-01 74.7% 85.1%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.62 47.0 4.27e-01 79.7% 92.6%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 35.0 3.70e-01 84.2% 66.2%
4wjg400 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.57 40.0 3.39e-01 100.0% 43.3%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.56 39.0 3.61e-01 70.9% 83.9%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.55 31.0 3.42e-01 83.5% 66.2%
2fji102 1.10.357.70 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain 0.54 39.0 3.69e-01 78.5% 61.1%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.54 29.0 2.97e-01 100.0% 50.9%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.54 40.0 3.69e-01 77.2% 97.6%
1m6nA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.53 26.0 2.75e-01 97.5% 48.9%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 39.0 4.29e-01 80.4% 91.7%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 38.0 4.29e-01 92.4% 98.4%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.52 30.0 2.79e-01 100.0% 44.2%
6q45G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.52 30.0 3.11e-01 100.0% 59.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 31.0 2.66e-01 100.0% 39.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716154 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.72 35.0 4.83e-01 77.8% 92.5%
2818296 601.3.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › RIP_P131-like 0.65 37.0 4.24e-01 71.5% 73.7%
3664107 192.18.1.0 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.65 47.0 2.95e-01 73.4% 28.9%
3264412 109.4.1.1554 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TARBP1 0.61 44.0 3.16e-01 73.4% 38.4%
3168691 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 39.0 3.71e-01 73.4% 57.8%
4453559 1075.1.1.65 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF2705 0.58 40.0 3.49e-01 70.3% 93.1%
3509943 109.4.1.182 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB 0.55 40.0 2.65e-01 75.3% 35.8%
4464985 109.4.1.954 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_N 0.53 37.0 3.34e-01 70.9% 70.0%
3809726 109.4.1.901 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 0.53 38.0 3.34e-01 72.8% 59.1%
3733261 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 43.0 3.06e-01 84.8% 67.3%
3330492 109.4.1.1323 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IMB1 0.53 37.0 2.94e-01 73.4% 35.0%
3727840 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.10e-01 87.3% 67.7%
3194941 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 47.0 3.43e-01 95.6% 91.9%
3732099 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 43.0 3.15e-01 87.3% 71.7%
3637424 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.83e-01 84.8% 57.6%
3767488 109.4.1.248 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYCP2_ARLD 0.51 38.0 3.19e-01 75.9% 54.6%
3414688 109.4.1.170 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.51 37.0 2.24e-01 72.8% 34.3%
3712649 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.51 44.0 3.11e-01 93.0% 95.2%
3720402 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 41.0 2.99e-01 86.1% 67.3%
3368627 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 37.0 2.96e-01 74.7% 69.5%
3729008 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 41.0 2.90e-01 86.1% 68.3%