←Back to structures

LC644974.1__BCZ75938.1__X__00006

Bact-Vir

LC644974.1__BCZ75938.1__X__00006

Identity

Accession:
LC644974 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Komagataeibacter_phage_phiKM1

TaxID: 2860317

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-88_267-288
PDB
Domain cluster: rep: IMGVR_UViG_3300035208_006812-3300035208-Ga0376279_0001310_10524_11129__D12-87_165-188
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 34.0 3.13e-01 98.9% 43.2%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 48.0 5.11e-01 91.4% 94.0%
1sknP00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.60 38.0 4.20e-01 98.9% 81.1%
2kz5A00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.60 39.0 3.95e-01 100.0% 67.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.59 35.0 3.78e-01 90.3% 69.6%
3oqbH02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 41.0 3.03e-01 74.2% 66.5%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.57 40.0 3.52e-01 74.2% 65.5%
4upkA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.57 41.0 2.61e-01 75.3% 31.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.57 50.0 4.37e-01 100.0% 86.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 4.33e-01 100.0% 83.7%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.55 39.0 3.79e-01 98.9% 66.0%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.54 44.0 4.28e-01 89.2% 91.2%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 36.0 4.08e-01 96.8% 97.0%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 3.20e-01 90.3% 45.3%
2h1qA01 3.30.390.100 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 37.0 3.40e-01 97.8% 54.7%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 4.18e-01 97.8% 82.0%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 37.0 2.94e-01 74.2% 62.0%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 4.16e-01 100.0% 87.1%
4mhxA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.51 45.0 2.92e-01 100.0% 88.7%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 36.0 3.82e-01 82.8% 84.0%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 39.0 3.21e-01 81.7% 83.3%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.50 37.0 3.06e-01 79.6% 50.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011362 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 42.0 2.82e-01 98.9% 18.8%
4965206 4221.1.1.3 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 0.63 36.0 4.11e-01 91.4% 75.7%
3260465 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.61 41.0 2.80e-01 100.0% 20.3%
4234211 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.60 40.0 4.17e-01 97.8% 75.3%
3506428 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.57 46.0 4.05e-01 100.0% 59.3%
4530314 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.57 33.0 3.93e-01 90.3% 91.4%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.29e-01 98.9% 68.3%
3852703 137.1.1.1 ↗ alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › bZIP_Maf 0.56 37.0 3.37e-01 100.0% 49.6%
3396774 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.55 48.0 4.52e-01 100.0% 79.1%
4988664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 4.31e-01 100.0% 100.0%
3396749 5.1.5.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.52 47.0 3.17e-01 100.0% 50.7%
4952106 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.74e-01 100.0% 69.4%
3928614 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 46.0 3.82e-01 100.0% 79.4%
3734385 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.51 46.0 2.99e-01 100.0% 41.9%
3883661 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 41.0 3.94e-01 100.0% 76.4%
3568424 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.54e-01 100.0% 67.7%
4890983 6110.1.1.0 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain 0.51 39.0 2.50e-01 80.6% 30.2%
4942106 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.50 45.0 3.14e-01 100.0% 35.5%
D2 high residues 92-112_174-258
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 41.0 3.91e-01 78.3% 95.1%
3vk8A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 40.0 3.57e-01 83.0% 93.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290543 150.5.1.11 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › T7SS_ESX_EspC 0.53 25.0 2.52e-01 92.5% 40.7%
5073443 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.53 44.0 3.00e-01 94.3% 52.7%
D3 high residues 115-159
PDB