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LC644974.1__BCZ75984.1__X__00052

Bact-Vir

LC644974.1__BCZ75984.1__X__00052

Identity

Accession:
LC644974 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Komagataeibacter_phage_phiKM1

TaxID: 2860317

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-92
PDB
Domain cluster: rep: OQ504958.1__WID41926.1__X__00008__D3-88
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.63 53.0 5.02e-01 95.5% 91.8%
2hs5A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.61 51.0 4.43e-01 93.3% 78.6%
3qyqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 38.0 2.70e-01 89.9% 22.3%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 41.0 3.53e-01 79.8% 94.0%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.54 39.0 4.21e-01 93.3% 91.8%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.58e-01 84.3% 97.1%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.52 42.0 3.94e-01 89.9% 93.0%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.51 39.0 3.80e-01 100.0% 71.6%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 44.0 3.64e-01 95.5% 81.0%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 37.0 3.43e-01 79.8% 60.7%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.50 43.0 3.61e-01 94.4% 82.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945607 3547.1.1.2 ↗ a+b two layers › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › Phage_TAC_7 0.77 67.0 6.88e-01 100.0% 98.8%
3965726 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.71 61.0 6.30e-01 95.5% 97.6%
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.69 57.0 5.84e-01 96.6% 95.3%
3744144 632.6.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_fungi 0.62 44.0 3.65e-01 74.2% 84.5%
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.61 45.0 4.94e-01 94.4% 100.0%
3198377 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.58 37.0 3.50e-01 100.0% 53.2%
4013725 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.57 39.0 4.10e-01 70.8% 82.5%
3821521 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.56 43.0 3.91e-01 85.4% 96.2%
4389577 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.54 45.0 3.61e-01 94.4% 60.5%
5042643 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 35.0 3.93e-01 94.4% 88.6%
3952920 3625.1.1.1 ↗ alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › Cmr2_hel_dom2 0.52 37.0 3.84e-01 75.3% 100.0%
4992348 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 33.0 2.41e-01 91.0% 23.7%
3744846 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.50 36.0 3.35e-01 76.4% 79.1%
D2 high residues 101-184
PDB
Domain cluster: rep: OQ504958.1__WID41926.1__X__00008__D3-88
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10109.16 best Phage_TAC_7 33.5 4.90e-08 95.2% 89.9%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.66 58.0 5.32e-01 100.0% 90.9%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 47.0 4.09e-01 77.4% 92.2%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 44.0 4.34e-01 78.6% 98.9%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.29e-01 72.6% 40.9%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 45.0 3.70e-01 97.6% 76.7%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 38.0 2.64e-01 79.8% 26.2%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 37.0 3.46e-01 82.1% 58.0%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 42.0 3.63e-01 89.3% 63.6%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 36.0 2.50e-01 73.8% 30.0%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 40.0 3.45e-01 86.9% 95.0%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 36.0 2.87e-01 75.0% 65.2%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.51 34.0 3.68e-01 72.6% 82.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945607 3547.1.1.2 ↗ a+b two layers › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › Phage_TAC_7 0.78 70.0 7.04e-01 100.0% 96.5%
3965726 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.69 62.0 6.21e-01 100.0% 96.5%
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.67 56.0 5.66e-01 100.0% 92.9%
3715579 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 43.0 3.90e-01 72.6% 59.3%
3411217 101.1.1.319 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-binding_2 0.62 37.0 3.00e-01 98.8% 30.3%
5080181 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.59 40.0 3.78e-01 71.4% 63.8%
3438510 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 40.0 3.87e-01 85.7% 66.0%
3304642 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 30.0 3.27e-01 71.4% 62.9%
3480389 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 3.78e-01 100.0% 76.2%
3838579 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 36.0 3.77e-01 85.7% 75.0%
3624055 550.1.1.1 ↗ alpha complex topology › Her-1 › Her-1 › Her-1 › Caenor_Her-1 0.52 38.0 3.29e-01 77.4% 66.9%
4596043 1175.1.1.3 ↗ alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › CN_hydrolase 0.52 36.0 2.86e-01 71.4% 68.6%
3660132 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 32.0 3.24e-01 100.0% 61.2%