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LC644975.1__BCZ76040.1__X__00035

Bact-Vir

LC644975.1__BCZ76040.1__X__00035

Identity

Accession:
LC644975 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Komagataeibacter_phage_phiKX1

TaxID: 2860315

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-96
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.64 49.0 4.74e-01 81.8% 91.0%
3mkzN00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 50.0 4.66e-01 90.9% 68.2%
6b5cA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 46.0 4.63e-01 80.7% 100.0%
2knaA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 37.0 4.42e-01 83.0% 100.0%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.57 44.0 4.35e-01 86.4% 78.3%
6dkuA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.57 41.0 4.44e-01 88.6% 93.2%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 34.0 4.16e-01 88.6% 100.0%
2mr5A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 3.39e-01 72.7% 90.4%
1eqfA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 38.0 3.44e-01 71.6% 67.2%
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.55 46.0 3.11e-01 88.6% 72.3%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.55 43.0 4.36e-01 83.0% 87.2%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.55 41.0 4.15e-01 80.7% 83.0%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.55 47.0 4.75e-01 98.9% 96.7%
4gywA05 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 41.0 3.45e-01 86.4% 91.9%
1rjgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.09e-01 93.2% 67.0%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 34.0 3.59e-01 85.2% 75.6%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 40.0 3.30e-01 85.2% 56.9%
2glzA00 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.51 37.0 3.17e-01 77.3% 90.6%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 3.33e-01 85.2% 63.6%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.50 41.0 3.95e-01 90.9% 82.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510015 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 63.0 6.23e-01 96.6% 100.0%
3416310 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.68 51.0 5.48e-01 81.8% 100.0%
3476935 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.65 55.0 5.50e-01 95.5% 100.0%
3527596 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.64 48.0 5.09e-01 80.7% 100.0%
3191012 103.4.1.2 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.64 52.0 4.97e-01 90.9% 95.2%
4248743 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.61 41.0 4.48e-01 77.3% 85.7%
3845205 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.60 45.0 4.68e-01 79.5% 100.0%
3705705 103.4.1.2 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.60 48.0 4.44e-01 88.6% 74.8%
4433670 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.60 43.0 3.63e-01 81.8% 44.0%
3895555 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.59 46.0 4.80e-01 86.4% 100.0%
4013998 148.1.3.23 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.59 42.0 4.07e-01 76.1% 99.0%
3565821 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.58 47.0 4.91e-01 88.6% 100.0%
4156650 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.58 48.0 4.79e-01 92.0% 100.0%
2723630 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.57 50.0 5.00e-01 98.9% 98.9%
4236132 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.57 50.0 5.00e-01 100.0% 100.0%
5070523 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.56 39.0 3.87e-01 72.7% 88.4%
3690801 3361.1.1.1 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head 0.55 43.0 3.74e-01 85.2% 54.7%
185159 3552.1.1.1 ↗ alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 0.55 42.0 4.28e-01 83.0% 84.3%
3806684 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 43.0 4.30e-01 88.6% 85.6%
3928479 7516.1.1.33 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF273 0.54 47.0 3.61e-01 96.6% 72.4%
4983838 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.54 42.0 4.04e-01 83.0% 80.0%
3669814 592.6.1.0 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain 0.54 42.0 4.41e-01 89.8% 91.3%
3785965 1128.1.1.17 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF28466 0.53 41.0 3.80e-01 81.8% 75.5%
3492134 2003.1.9.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB 0.53 42.0 2.89e-01 86.4% 84.0%
3365934 7523.1.1.61 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lig_chan 0.52 39.0 2.82e-01 93.2% 26.9%
D2 high residues 113-166
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.73 59.0 5.15e-01 88.9% 59.5%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 56.0 4.87e-01 90.7% 55.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 61.0 4.77e-01 100.0% 79.5%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 60.0 4.03e-01 98.1% 26.7%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 4.19e-01 90.7% 47.8%
6nplA01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.66 59.0 3.41e-01 100.0% 14.1%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.64 51.0 4.97e-01 90.7% 83.3%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.64 52.0 4.24e-01 90.7% 46.7%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 55.0 4.80e-01 100.0% 65.9%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.63 55.0 3.79e-01 100.0% 28.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 55.0 4.43e-01 100.0% 65.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 49.0 4.70e-01 88.9% 74.6%
5b7cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 55.0 4.36e-01 100.0% 73.0%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 55.0 4.41e-01 100.0% 72.2%
3cqcA00 1.20.190.50 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.62 50.0 3.26e-01 100.0% 19.8%
2nqlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.61 44.0 2.89e-01 100.0% 18.6%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 3.95e-01 88.9% 46.2%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.61 48.0 4.36e-01 88.9% 63.5%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.60 46.0 4.23e-01 88.9% 62.3%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.60 47.0 3.74e-01 88.9% 46.5%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 42.0 2.73e-01 98.1% 15.4%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.59 48.0 3.95e-01 90.7% 56.6%
3lv8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 51.0 3.44e-01 96.3% 30.4%
1a5kC02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 48.0 2.91e-01 92.6% 14.4%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 52.0 3.98e-01 100.0% 81.6%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 49.0 4.00e-01 100.0% 62.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 47.0 4.20e-01 90.7% 62.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.22e-01 92.6% 78.6%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 3.80e-01 88.9% 50.5%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 46.0 3.79e-01 100.0% 46.1%
3k3wB03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.56 45.0 3.27e-01 90.7% 66.7%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 47.0 3.52e-01 96.3% 59.6%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 43.0 3.91e-01 90.7% 62.8%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 3.77e-01 100.0% 69.6%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.55 48.0 3.75e-01 98.1% 61.5%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.54 42.0 3.91e-01 90.7% 67.1%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.54 40.0 4.15e-01 94.4% 91.7%
2qbyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.18e-01 100.0% 54.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4268471 141.1.1.4 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.73 56.0 3.46e-01 88.9% 14.8%
3660913 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.69 51.0 4.35e-01 88.9% 47.8%
3412555 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 57.0 4.51e-01 94.4% 51.8%
3553985 109.4.1.148 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 0.68 59.0 3.40e-01 98.1% 10.8%
3232268 109.40.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Hira 0.67 57.0 4.17e-01 98.1% 35.2%
4018180 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.67 58.0 3.74e-01 100.0% 38.0%
4947568 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 52.0 3.58e-01 88.9% 25.8%
3989579 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.65 51.0 2.95e-01 96.3% 9.2%
4949113 4958.1.1.4 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.64 55.0 4.22e-01 100.0% 54.5%
3963743 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 56.0 4.55e-01 100.0% 77.1%
4025328 603.1.1.228 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, STX6_10_61_N 0.64 55.0 3.74e-01 100.0% 41.0%
3255143 630.1.1.0 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.64 54.0 3.71e-01 94.4% 58.4%
3235839 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.64 56.0 3.91e-01 100.0% 86.9%
3597047 603.1.1.17 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.64 55.0 3.54e-01 100.0% 37.4%
3695842 109.4.1.1407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.64 56.0 2.99e-01 100.0% 6.1%
3696173 109.4.1.148 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 0.63 55.0 3.19e-01 100.0% 18.1%
4978572 604.17.1.1 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.63 56.0 5.18e-01 100.0% 84.1%
3171100 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.62 53.0 4.44e-01 100.0% 80.0%
3476064 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 48.0 3.84e-01 90.7% 41.7%
4879470 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.61 48.0 4.36e-01 88.9% 72.0%
4927356 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.59 49.0 3.93e-01 90.7% 54.3%
3890044 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 47.0 4.43e-01 88.9% 98.5%
5067407 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 48.0 3.98e-01 98.1% 60.9%
4032379 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.59 46.0 4.25e-01 90.7% 65.3%
3923553 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 50.0 3.55e-01 100.0% 86.3%
3408508 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.58 45.0 4.03e-01 88.9% 61.3%
3921806 3730.1.1.0 ↗ alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain 0.57 43.0 3.99e-01 87.0% 65.3%
4940281 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.57 45.0 4.30e-01 90.7% 75.4%
4988975 5069.1.1.95 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Nitrate_red_gam 0.56 43.0 3.13e-01 90.7% 30.0%
5078258 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.56 48.0 3.12e-01 98.1% 58.1%
3940038 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.55 46.0 2.54e-01 98.1% 12.1%
4453815 192.12.1.1 ↗ alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › Prok-TraM 0.55 46.0 3.94e-01 98.1% 80.0%
3597411 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 2.77e-01 98.1% 23.3%
5046197 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.54 47.0 3.01e-01 100.0% 31.6%
D3 high residues 176-223
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.77 64.0 4.86e-01 91.7% 93.8%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 53.0 4.64e-01 91.7% 64.6%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 54.0 4.31e-01 91.7% 65.7%
1he8A03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.68 57.0 4.50e-01 100.0% 43.2%
4zdnA02 1.10.1240.100 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.67 48.0 3.93e-01 93.8% 40.4%
3uswA02 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 48.0 4.93e-01 85.4% 92.9%
4l9mA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.66 55.0 4.10e-01 100.0% 66.9%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.65 53.0 4.15e-01 100.0% 53.0%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.61 43.0 3.74e-01 81.2% 80.0%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 47.0 3.48e-01 93.8% 86.7%
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 4.38e-01 97.9% 100.0%
2yjkC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 46.0 3.27e-01 87.5% 77.7%
4fqgB03 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.58 39.0 3.59e-01 70.8% 57.6%
5e5nA02 1.10.1240.100 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.58 43.0 3.54e-01 100.0% 41.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3640682 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.82 71.0 4.20e-01 100.0% 14.9%
3421354 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 3.45e-01 97.9% 18.3%
3996706 604.1.1.124 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.65 54.0 3.58e-01 100.0% 44.2%
3972460 564.1.1.3 ↗ alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › DUF4880 0.62 48.0 4.84e-01 89.6% 88.0%
3215741 309.1.1.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.59 50.0 3.43e-01 100.0% 73.7%