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LC644975.1__BCZ76054.1__X__00049

Bact-Vir

LC644975.1__BCZ76054.1__X__00049

Identity

Accession:
LC644975 ↗
Kingdom:
phage

Quality

57.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Komagataeibacter_phage_phiKX1

TaxID: 2860315

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-65
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.73 60.0 4.45e-01 90.7% 42.6%
4jrfA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 60.0 4.21e-01 94.4% 61.7%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 56.0 4.03e-01 98.1% 73.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 49.0 4.22e-01 83.3% 78.7%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.65 54.0 3.38e-01 94.4% 34.6%
3gf8A01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 54.0 3.96e-01 98.1% 75.3%
2vhlB01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.61 51.0 4.31e-01 94.4% 72.8%
2h5fB00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 44.0 4.04e-01 98.1% 62.2%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 38.0 2.83e-01 72.2% 34.6%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 45.0 3.00e-01 100.0% 46.4%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 37.0 2.82e-01 72.2% 45.9%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 46.0 3.62e-01 94.4% 68.8%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.26e-01 94.4% 70.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.12e-01 81.5% 73.1%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 33.0 2.64e-01 96.3% 30.8%
2hjeA02 2.20.20.100 Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain 0.50 34.0 3.44e-01 70.4% 100.0%
1zgrA02 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 43.0 3.24e-01 100.0% 57.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022519 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.72 60.0 4.63e-01 92.6% 46.7%
5066681 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.71 59.0 4.74e-01 92.6% 53.3%
3606070 7032.1.1.0 ↗ a+b two layers › Paratox › Paratox › Paratox 0.68 51.0 5.00e-01 81.5% 93.3%
4953501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 45.0 5.07e-01 70.4% 95.0%
5016169 3769.1.1.0 ↗ 0.64 50.0 5.15e-01 85.2% 96.0%
5040101 375.12.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.62 50.0 4.27e-01 87.0% 65.9%
4954545 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.59 40.0 3.39e-01 70.4% 85.6%
3575982 7516.1.1.157 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › LbH_EIF2B 0.58 48.0 2.88e-01 100.0% 19.8%
2795467 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.58 48.0 3.08e-01 98.1% 31.7%
3797482 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.58 47.0 3.05e-01 98.1% 30.5%
3690519 3561.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.58 45.0 2.65e-01 83.3% 20.2%
3515628 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 48.0 3.86e-01 94.4% 65.7%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 37.0 3.54e-01 72.2% 98.5%
3362139 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.55 47.0 3.08e-01 100.0% 79.5%
3277720 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.55 37.0 3.94e-01 72.2% 100.0%
3328167 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.53 44.0 3.45e-01 98.1% 60.8%
4943994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.50e-01 90.7% 63.0%
3993962 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.51 41.0 3.12e-01 94.4% 64.8%