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LC644975.1__BCZ76094.1__X__00089

Bact-Vir

LC644975.1__BCZ76094.1__X__00089

Identity

Accession:
LC644975 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Komagataeibacter_phage_phiKX1

TaxID: 2860315

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-113_213-248
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vkgA18 1.10.8.720 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor 0.57 42.0 4.05e-01 76.5% 98.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4120431 190.1.1.7 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox 0.52 39.0 4.21e-01 78.5% 96.2%
D2 medium residues 114-212
PDB
Domain cluster: rep: IMGVR_UViG_3300017931_000280-3300017931-Ga0187877_10082255__D148-223
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.74 66.0 5.11e-01 100.0% 45.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 40.0 5.32e-01 83.8% 100.0%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 65.0 4.54e-01 100.0% 32.2%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 65.0 4.51e-01 100.0% 32.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 39.0 4.76e-01 91.9% 84.6%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 42.0 5.16e-01 89.9% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 39.0 4.84e-01 92.9% 91.5%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 39.0 4.94e-01 82.8% 96.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 41.0 4.97e-01 98.0% 93.5%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 5.27e-01 100.0% 94.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 43.0 5.13e-01 94.9% 98.4%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 43.0 5.15e-01 82.8% 98.4%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.07e-01 100.0% 47.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 40.0 4.66e-01 84.8% 85.3%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 43.0 5.09e-01 92.9% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 39.0 4.79e-01 85.9% 96.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 42.0 4.88e-01 100.0% 94.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 48.0 5.35e-01 100.0% 97.4%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 47.0 5.23e-01 100.0% 94.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 40.0 4.87e-01 84.8% 100.0%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 47.0 5.27e-01 100.0% 97.4%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 44.0 4.82e-01 91.9% 85.4%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 41.0 4.83e-01 82.8% 98.5%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 42.0 4.73e-01 82.8% 89.2%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.84e-01 87.9% 92.0%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.93e-01 99.0% 93.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 39.0 4.52e-01 86.9% 92.5%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.56e-01 85.9% 85.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.21e-01 100.0% 67.6%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.53e-01 90.9% 98.6%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.55 29.0 3.27e-01 90.9% 64.5%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 47.0 3.66e-01 100.0% 51.2%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 31.0 3.32e-01 86.9% 68.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 43.0 5.46e-01 92.9% 90.0%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 44.0 5.56e-01 94.9% 100.0%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 49.0 5.65e-01 100.0% 94.3%
4942163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 41.0 4.91e-01 93.9% 83.1%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.72 50.0 5.79e-01 100.0% 100.0%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 46.0 4.78e-01 98.0% 70.0%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 48.0 5.37e-01 100.0% 89.3%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 39.0 4.54e-01 97.0% 74.3%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 3.51e-01 96.0% 35.5%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.72 47.0 5.47e-01 98.0% 97.1%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 45.0 4.65e-01 98.0% 66.3%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 48.0 5.00e-01 99.0% 75.6%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.47e-01 100.0% 93.2%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 48.0 5.41e-01 100.0% 93.2%
3672445 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 43.0 3.79e-01 100.0% 42.1%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 42.0 4.45e-01 100.0% 66.7%
5063688 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 50.0 5.22e-01 100.0% 82.0%
4951199 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 49.0 5.53e-01 100.0% 97.3%
5020812 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 48.0 5.42e-01 99.0% 96.0%
4952214 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 49.0 5.57e-01 100.0% 100.0%
4957418 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 48.0 5.43e-01 100.0% 97.3%
4030943 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 49.0 5.41e-01 100.0% 93.7%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.68 45.0 4.79e-01 98.0% 78.8%
4984041 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 48.0 5.49e-01 99.0% 98.7%
5040422 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 48.0 5.44e-01 99.0% 98.7%
353902 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 48.0 5.36e-01 100.0% 96.1%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 47.0 5.22e-01 100.0% 94.9%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 42.0 4.79e-01 99.0% 86.7%
3589934 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.66 53.0 4.40e-01 100.0% 50.3%
4952478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 47.0 5.30e-01 99.0% 98.7%
5030535 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 46.0 5.15e-01 99.0% 96.0%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 48.0 5.15e-01 100.0% 95.3%
4203592 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.37e-01 98.0% 89.2%
4614716 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.62 42.0 4.88e-01 82.8% 100.0%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.67e-01 92.9% 100.0%
2726588 4.1.1.317 ↗ beta barrels › SH3 › SH3 › SH3 › Fe_dep_repress 0.60 46.0 4.80e-01 100.0% 89.0%
4033059 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.56e-01 91.9% 90.0%
4682138 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.47e-01 90.9% 94.7%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.54 38.0 3.87e-01 100.0% 72.7%
4934718 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.54 37.0 2.85e-01 70.7% 32.3%
3176702 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.53 45.0 3.92e-01 100.0% 60.6%
4324652 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.51 37.0 2.88e-01 75.8% 76.0%