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LC647030.1__BDA81509.1__X__00030

Bact-Vir

LC647030.1__BDA81509.1__X__00030

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
D2 high residues 55-149
PDB
Domain cluster: rep: LC576631.1__BCK59779.1__X__00084__D45-141
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.59 45.0 4.08e-01 80.0% 87.5%
4nufA02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.59 44.0 3.64e-01 80.0% 88.3%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 36.0 3.59e-01 70.5% 57.4%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.58 34.0 3.49e-01 77.9% 58.7%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 3.18e-01 74.7% 47.0%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 45.0 3.71e-01 95.8% 92.4%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 30.0 3.27e-01 100.0% 66.7%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.53 41.0 4.29e-01 100.0% 91.9%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 30.0 2.88e-01 100.0% 45.5%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 45.0 3.85e-01 93.7% 92.7%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.52 38.0 3.53e-01 77.9% 89.8%
2v57A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 36.0 2.98e-01 72.6% 67.8%
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 41.0 3.50e-01 90.5% 70.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4567807 397.7.1.6 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 0.63 37.0 4.38e-01 70.5% 86.2%
3693234 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 33.0 3.63e-01 97.9% 65.3%
3704156 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.59 40.0 3.23e-01 76.8% 35.7%
3368026 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.58 34.0 3.64e-01 73.7% 67.5%
3691381 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.55 33.0 3.61e-01 97.9% 73.3%
3409039 543.1.1.2 ↗ few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Fz 0.55 38.0 3.33e-01 72.6% 92.0%
3391293 101.1.10.13 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.55 40.0 3.68e-01 75.8% 65.8%
4927432 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.54 42.0 4.49e-01 93.7% 100.0%
3329178 4953.1.1.24 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › Tim17 0.53 36.0 3.83e-01 74.7% 81.2%
5073394 148.1.3.20 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.53 38.0 3.94e-01 98.9% 81.1%
3603285 325.1.2.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE › MoaE 0.53 36.0 3.36e-01 97.9% 55.5%
3626373 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 34.0 3.49e-01 87.4% 67.4%
3510492 604.12.1.60 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Hpre_diP_synt_I 0.52 38.0 3.80e-01 92.6% 75.0%
3930503 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.51 35.0 3.52e-01 80.0% 69.5%
4997975 148.1.3.20 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.51 37.0 3.61e-01 94.7% 67.3%
3638722 1075.1.2.23 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › PF28681 0.51 38.0 2.87e-01 78.9% 82.9%
3267322 2004.5.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN,dDENN 0.51 39.0 2.91e-01 82.1% 98.4%
3449999 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 42.0 3.83e-01 90.5% 93.1%
3804346 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 35.0 3.89e-01 95.8% 100.0%