←Back to structures

LC647030.1__BDA81552.1__X__00073

Bact-Vir

LC647030.1__BDA81552.1__X__00073

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-104
PDB
Domain cluster: rep: NC_028983.1__YP_009216173.1__AVV46_gp119__00175__D12-93
D2 high residues 136-198
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 6.64e-01 95.2% 88.9%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 6.55e-01 93.7% 90.2%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.79 50.0 5.91e-01 71.4% 100.0%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 5.21e-01 96.8% 51.4%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.86e-01 79.4% 93.8%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 6.14e-01 92.1% 84.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 5.47e-01 98.4% 68.8%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 56.0 3.57e-01 81.0% 36.4%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 58.0 5.71e-01 87.3% 80.9%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.49e-01 87.3% 83.6%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 50.0 3.91e-01 82.5% 35.1%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 64.0 4.98e-01 100.0% 59.4%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.43e-01 90.5% 73.3%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 57.0 5.57e-01 95.2% 85.3%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.30e-01 79.4% 86.2%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 56.0 5.52e-01 90.5% 91.0%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 44.0 3.91e-01 77.8% 50.5%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.60 45.0 4.45e-01 85.7% 75.4%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 43.0 4.01e-01 100.0% 60.5%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.53 44.0 4.15e-01 100.0% 76.9%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 44.0 3.32e-01 100.0% 64.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3341091 101.35.1.6 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.86 63.0 6.31e-01 85.7% 75.4%
5073558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 67.0 6.27e-01 85.7% 76.0%
3312794 101.1.3.22 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.83 63.0 5.97e-01 85.7% 68.0%
4984847 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.83 61.0 6.04e-01 79.4% 75.4%
3574560 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 73.0 6.45e-01 100.0% 84.4%
3789800 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 62.0 5.85e-01 84.1% 70.7%
4983993 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.79 64.0 6.54e-01 87.3% 91.7%
3243170 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 63.0 5.81e-01 90.5% 68.8%
3424245 101.1.1.269 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.77 57.0 5.90e-01 84.1% 83.3%
4965236 101.1.2.952 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29290 0.77 57.0 5.85e-01 79.4% 83.3%
4971409 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 5.34e-01 85.7% 63.2%
3310491 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 5.78e-01 79.4% 90.0%
3887051 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.76 67.0 5.98e-01 98.4% 81.1%
3215991 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.80e-01 85.7% 81.5%
4949368 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 53.0 5.58e-01 74.6% 85.5%
3243507 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.72 60.0 5.99e-01 92.1% 87.7%
4928805 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.72 59.0 5.58e-01 88.9% 74.7%
3442515 101.1.1.269 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.72 56.0 5.17e-01 84.1% 67.5%
4068007 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.71 58.0 5.65e-01 90.5% 81.4%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.71 60.0 5.97e-01 93.7% 95.4%
5050597 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.70 56.0 5.94e-01 87.3% 100.0%
3574083 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 47.0 5.33e-01 71.4% 97.8%
3243495 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.70 53.0 5.59e-01 81.0% 92.7%
3266463 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 50.0 5.31e-01 77.8% 96.4%
5073990 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.69 61.0 5.83e-01 100.0% 86.7%
5000282 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 4.80e-01 90.5% 58.1%
3200990 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 4.32e-01 92.1% 48.0%
5000156 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 5.28e-01 84.1% 100.0%
3600867 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 38.0 3.46e-01 73.0% 46.7%
3465994 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.57 47.0 4.49e-01 95.2% 88.0%
3918881 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.57 44.0 3.97e-01 85.7% 66.7%
4557831 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.54 48.0 3.58e-01 100.0% 50.0%