←Back to structures

LC647030.1__BDA81561.1__X__00082

Bact-Vir

LC647030.1__BDA81561.1__X__00082

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

49.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 111-194
PDB
Domain cluster: rep: KJ534580.1__AHX01161.1__M316_0096__00096__D78-136
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 52.0 5.69e-01 72.6% 77.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 59.0 6.18e-01 90.5% 84.4%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 51.0 5.13e-01 81.0% 65.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 44.0 5.57e-01 78.6% 97.9%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 5.71e-01 90.5% 90.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.57e-01 95.2% 87.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.48e-01 75.0% 85.3%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.55e-01 83.3% 88.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 49.0 5.76e-01 78.6% 98.3%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 5.15e-01 78.6% 96.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.50e-01 96.4% 91.3%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 4.56e-01 78.6% 65.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 45.0 5.21e-01 86.9% 98.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 48.0 5.30e-01 88.1% 95.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.51e-01 89.3% 95.7%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.66 46.0 4.43e-01 82.1% 63.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 5.47e-01 88.1% 98.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.00e-01 90.5% 87.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 5.00e-01 89.3% 81.4%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 5.34e-01 95.2% 98.6%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 5.22e-01 96.4% 89.9%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 5.05e-01 91.7% 95.9%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 47.0 4.71e-01 100.0% 83.5%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.59 25.0 3.36e-01 78.6% 75.6%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.74e-01 85.7% 95.0%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.77e-01 90.5% 89.5%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.27e-01 81.0% 84.4%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.56 44.0 3.41e-01 84.5% 80.9%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.56 41.0 3.90e-01 76.2% 88.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 49.0 4.68e-01 96.4% 81.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.51e-01 79.8% 90.3%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.49e-01 81.0% 93.9%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.52 36.0 3.95e-01 86.9% 89.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.88 52.0 5.32e-01 76.2% 62.5%
1108894 4.1.1.122 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_17 0.85 54.0 6.58e-01 82.1% 100.0%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.83 51.0 6.13e-01 73.8% 94.5%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.82 50.0 5.65e-01 73.8% 80.0%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.81 56.0 4.30e-01 89.3% 34.3%
3626531 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 55.0 5.41e-01 70.2% 71.1%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.81 48.0 6.00e-01 81.0% 100.0%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.81 51.0 4.79e-01 85.7% 54.0%
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 55.0 6.41e-01 91.7% 98.3%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.80 52.0 4.96e-01 88.1% 57.9%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 49.0 5.91e-01 83.3% 94.5%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.79 45.0 5.71e-01 78.6% 96.0%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.78 50.0 5.55e-01 70.2% 83.1%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 43.0 5.20e-01 76.2% 83.6%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 52.0 5.66e-01 78.6% 82.9%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 51.0 5.86e-01 89.3% 95.0%
3893368 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.76 56.0 6.31e-01 81.0% 100.0%
3902139 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.76 58.0 6.25e-01 79.8% 97.1%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.00e-01 89.3% 63.2%
2525277 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 48.0 5.61e-01 89.3% 93.2%
3518475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 48.0 5.15e-01 89.3% 77.1%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 47.0 5.31e-01 82.1% 83.1%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 56.0 6.12e-01 82.1% 92.9%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.77e-01 85.7% 96.7%
3572393 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.73 55.0 6.00e-01 81.0% 95.7%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.73 49.0 4.66e-01 81.0% 58.0%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.43e-01 92.9% 81.3%
4091771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.89e-01 89.3% 100.0%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 49.0 5.46e-01 84.5% 89.2%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.56e-01 82.1% 100.0%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 48.0 5.62e-01 86.9% 96.7%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.78e-01 89.3% 96.9%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.72 49.0 4.86e-01 83.3% 66.7%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.57e-01 89.3% 86.7%
403788 4.1.1.100 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_11 0.70 49.0 5.53e-01 85.7% 95.2%
1068760 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 43.0 4.51e-01 79.8% 66.7%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.70 50.0 5.39e-01 84.5% 88.6%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.70 51.0 5.78e-01 91.7% 100.0%
3243143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.34e-01 91.7% 96.9%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.67 61.0 4.81e-01 100.0% 79.4%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.10e-01 85.7% 96.7%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 53.0 5.37e-01 90.5% 85.9%
3635127 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.66 44.0 5.09e-01 70.2% 98.3%
3797642 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 3.82e-01 81.0% 36.8%
4026431 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 5.05e-01 84.5% 95.4%
3608770 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.64 46.0 3.73e-01 89.3% 40.6%
3396951 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.64 57.0 3.58e-01 96.4% 25.0%
3595917 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 3.71e-01 88.1% 40.6%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.64 52.0 5.38e-01 91.7% 92.5%
3245032 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.57e-01 89.3% 100.0%
3472726 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.60 51.0 4.46e-01 92.9% 86.4%
3831339 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 49.0 3.58e-01 100.0% 70.2%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 53.0 3.86e-01 100.0% 46.2%
3479384 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.01e-01 72.6% 53.8%
D2 high residues 219-269
PDB
Domain cluster: rep: LR215721.1__VEV89117.1__X__00001__D193-243
D3 medium residues 55-110
PDB
D4 medium residues 281-359
PDB
D5 medium residues 383-454
PDB