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LC647030.1__BDA81586.1__X__00107

Bact-Vir

LC647030.1__BDA81586.1__X__00107

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: rep: PP034390.1__WRW34728.1__CF5_0018__00018__D2-91
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.76e-01 97.9% 84.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 4.42e-01 85.3% 94.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 38.0 4.36e-01 89.5% 92.5%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 42.0 3.20e-01 100.0% 33.3%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 40.0 3.54e-01 72.6% 94.0%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.73e-01 72.6% 80.3%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 4.47e-01 95.8% 81.3%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 39.0 2.55e-01 74.7% 85.7%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.06e-01 98.9% 81.0%
2re2A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.55 34.0 3.19e-01 70.5% 50.0%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.55 34.0 3.77e-01 81.1% 79.7%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 31.0 3.54e-01 72.6% 76.1%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.83e-01 86.3% 64.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 38.0 3.46e-01 73.7% 99.2%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.54 33.0 3.39e-01 81.1% 62.8%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.53 35.0 3.39e-01 84.2% 60.0%
3wt0A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.39e-01 80.0% 68.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.53 35.0 3.88e-01 98.9% 90.0%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.53 46.0 4.24e-01 94.7% 82.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 38.0 2.84e-01 76.8% 96.9%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.53 46.0 3.86e-01 100.0% 86.9%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 34.0 3.57e-01 100.0% 72.1%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.52 37.0 3.55e-01 73.7% 73.0%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 4.32e-01 100.0% 90.9%
3cmbA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.51 41.0 3.10e-01 90.5% 80.4%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 44.0 3.56e-01 96.8% 94.4%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.90e-01 90.5% 35.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944430 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.68 40.0 4.32e-01 84.2% 68.8%
3788141 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 36.0 4.07e-01 75.8% 73.3%
3718648 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 37.0 3.55e-01 84.2% 50.0%
3264341 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.58 42.0 2.93e-01 75.8% 61.8%
3519114 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 36.0 3.47e-01 74.7% 54.5%
4974812 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 43.0 2.98e-01 80.0% 45.7%
3994368 5.1.8.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › APEH_N 0.57 49.0 3.66e-01 96.8% 39.1%
5001559 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.57 30.0 3.39e-01 96.8% 65.3%
3264756 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.57 42.0 4.14e-01 77.9% 87.0%
3936609 5.1.3.176 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.56 44.0 2.82e-01 96.8% 18.4%
3783544 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.56 42.0 3.90e-01 78.9% 79.2%
5019856 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.56 41.0 4.28e-01 91.6% 85.9%
4014194 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.56 40.0 4.00e-01 75.8% 92.0%
3214097 330.1.1.24 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.56 35.0 3.70e-01 76.8% 70.6%
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.56 40.0 4.10e-01 76.8% 90.5%
3610471 3986.1.1.1 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C 0.56 27.0 2.52e-01 94.7% 36.5%
5079117 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 40.0 2.92e-01 76.8% 48.1%
3958695 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.55 44.0 3.79e-01 88.4% 69.4%
3794101 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 43.0 3.42e-01 86.3% 83.3%
3668721 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.55 44.0 4.12e-01 88.4% 96.7%
3733265 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.55 41.0 3.97e-01 78.9% 88.6%
136506 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.55 42.0 4.22e-01 88.4% 79.8%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.54 38.0 4.35e-01 78.9% 98.6%
3925946 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.78e-01 82.1% 80.5%
3255777 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.54 41.0 4.17e-01 81.1% 93.7%
3931156 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 33.0 3.75e-01 75.8% 82.9%
3618370 330.1.1.24 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.54 35.0 3.40e-01 74.7% 57.8%
5039064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.80e-01 83.2% 77.9%
3227515 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 43.0 3.94e-01 87.4% 95.3%
3708150 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 2.64e-01 76.8% 48.4%
3479860 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 47.0 2.98e-01 96.8% 20.6%
3940470 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.53 41.0 2.75e-01 83.2% 75.7%
3739384 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.53 41.0 4.08e-01 91.6% 80.8%
3228340 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.53 42.0 4.15e-01 87.4% 82.0%
4345013 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.53 43.0 3.67e-01 89.5% 86.3%
3462291 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 41.0 2.86e-01 82.1% 95.1%
4012540 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 35.0 3.86e-01 89.5% 85.3%
1551409 2484.1.1.70 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA 0.53 40.0 3.19e-01 80.0% 58.8%
4929818 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.52 42.0 3.80e-01 88.4% 100.0%
3285421 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.52 43.0 3.76e-01 90.5% 77.2%
5051694 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.52 38.0 3.63e-01 76.8% 89.1%
3644145 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 42.0 2.90e-01 88.4% 26.0%
3267108 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.52 38.0 2.64e-01 78.9% 83.0%
5077631 2484.1.1.340 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.52 39.0 3.31e-01 80.0% 55.5%
3787121 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 43.0 3.97e-01 94.7% 92.0%
4001239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.68e-01 74.7% 77.9%
4032204 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.51 41.0 2.85e-01 92.6% 94.5%
3582026 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.51 37.0 4.02e-01 88.4% 93.8%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.50 37.0 4.01e-01 84.2% 95.0%