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LC647030.1__BDA81588.1__X__00109

Bact-Vir

LC647030.1__BDA81588.1__X__00109

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.89 76.0 5.73e-01 92.9% 42.1%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.88 72.0 6.40e-01 96.4% 64.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 70.0 5.58e-01 100.0% 53.6%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 69.0 4.51e-01 100.0% 59.2%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 69.0 4.25e-01 98.2% 18.6%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 68.0 5.88e-01 100.0% 93.2%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.75 65.0 5.19e-01 100.0% 48.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.75 65.0 5.81e-01 100.0% 72.8%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 67.0 5.88e-01 100.0% 72.8%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.74 67.0 5.66e-01 100.0% 65.9%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 4.82e-01 100.0% 41.5%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 67.0 4.52e-01 100.0% 29.8%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 62.0 4.84e-01 96.4% 78.2%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 61.0 5.90e-01 94.6% 87.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 62.0 6.21e-01 98.2% 96.6%
1d9cA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.72 50.0 3.92e-01 100.0% 33.9%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 62.0 5.69e-01 100.0% 90.7%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.71 58.0 4.57e-01 91.1% 44.5%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 62.0 5.52e-01 100.0% 67.9%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 61.0 5.92e-01 98.2% 87.1%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 61.0 5.17e-01 100.0% 59.8%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.71 52.0 4.62e-01 100.0% 55.7%
3ce2A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.70 59.0 4.43e-01 98.2% 41.6%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.70 60.0 5.68e-01 96.4% 95.5%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.70 53.0 5.21e-01 85.7% 80.3%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 59.0 4.50e-01 100.0% 41.1%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 61.0 5.65e-01 98.2% 81.7%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 60.0 4.86e-01 100.0% 53.6%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 58.0 5.59e-01 100.0% 86.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 56.0 5.12e-01 91.1% 74.3%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.68 59.0 4.20e-01 100.0% 83.0%
6tejB01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.68 57.0 3.68e-01 100.0% 19.2%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.68 53.0 4.83e-01 87.5% 67.1%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 59.0 5.65e-01 100.0% 85.9%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 59.0 4.70e-01 100.0% 51.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 54.0 5.39e-01 91.1% 96.6%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 55.0 4.62e-01 100.0% 59.4%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 4.57e-01 83.9% 75.0%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 57.0 5.65e-01 100.0% 91.7%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 57.0 5.62e-01 100.0% 93.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.66 56.0 5.57e-01 96.4% 98.3%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.65 51.0 4.17e-01 92.9% 45.4%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 55.0 5.26e-01 100.0% 85.3%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 53.0 4.43e-01 96.4% 59.0%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.64 54.0 5.31e-01 96.4% 90.2%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 52.0 4.52e-01 100.0% 56.1%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.62 51.0 4.44e-01 100.0% 57.6%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.62 48.0 4.84e-01 92.9% 87.7%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.61 52.0 4.66e-01 100.0% 67.5%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.60 50.0 4.30e-01 92.9% 60.0%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 47.0 4.04e-01 92.9% 59.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742534 622.4.1.52 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › TMEM254 0.87 80.0 6.49e-01 100.0% 56.0%
3288637 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.86 77.0 6.97e-01 100.0% 74.7%
3735933 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.86 77.0 5.64e-01 100.0% 39.3%
3696717 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.85 77.0 5.23e-01 100.0% 30.0%
3317016 150.5.1.102 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PF28483 0.80 72.0 6.72e-01 100.0% 82.4%
3679373 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.78 68.0 6.48e-01 94.6% 83.1%
4930182 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.78 69.0 4.68e-01 100.0% 28.2%
1034882 3567.1.1.2 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › GP41 0.77 69.0 6.05e-01 100.0% 70.7%
3623143 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.77 68.0 5.95e-01 100.0% 71.8%
3988454 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 64.0 5.96e-01 94.6% 80.0%
3497897 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.76 68.0 6.32e-01 100.0% 87.1%
3576327 6067.1.1.1 ↗ alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › SGTA_dimer 0.75 61.0 5.54e-01 96.4% 66.7%
3218199 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.74 65.0 5.61e-01 100.0% 67.8%
3482273 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.74 67.0 5.31e-01 100.0% 53.2%
3239952 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.74 66.0 3.86e-01 100.0% 13.6%
4949863 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 64.0 5.82e-01 100.0% 80.0%
3593736 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.70 62.0 5.12e-01 100.0% 62.0%
5047148 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.70 59.0 3.69e-01 100.0% 19.4%
3982740 5086.1.1.190 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.69 57.0 3.99e-01 98.2% 28.0%
3167364 2004.1.1.481 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.67 58.0 3.44e-01 100.0% 13.1%
3473827 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 55.0 5.49e-01 100.0% 93.3%
2075294 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.65 55.0 4.66e-01 98.2% 55.6%
3973864 6026.1.1.2 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › GlpM 0.63 53.0 4.40e-01 98.2% 52.3%
3917098 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 54.0 3.16e-01 100.0% 45.7%
3253283 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.63 53.0 4.61e-01 100.0% 58.9%