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LC647030.1__BDA81616.1__X__00137

Bact-Vir

LC647030.1__BDA81616.1__X__00137

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

59.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-86
PDB
Domain cluster: rep: MH356730.1__AWY02957.1__X__00102__D6-56
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27330.1 best IsaA-like_N 89.1 2.00e-25 92.7% 94.1%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.66 45.0 3.36e-01 72.7% 89.0%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 43.0 3.68e-01 72.7% 90.4%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.63 49.0 3.72e-01 87.3% 42.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 46.0 3.48e-01 80.0% 71.3%
4nurA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.61 45.0 3.55e-01 83.6% 41.2%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 50.0 3.91e-01 94.5% 50.8%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 43.0 3.58e-01 80.0% 57.7%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 40.0 3.45e-01 72.7% 92.4%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 42.0 3.68e-01 80.0% 58.9%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 3.75e-01 100.0% 41.6%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 47.0 4.24e-01 96.4% 86.6%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 40.0 3.07e-01 74.5% 61.6%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.56 47.0 4.42e-01 94.5% 97.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 45.0 3.60e-01 94.5% 51.7%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 37.0 3.22e-01 70.9% 79.8%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 42.0 3.69e-01 89.1% 76.9%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 41.0 3.87e-01 92.7% 87.8%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 43.0 2.59e-01 94.5% 12.3%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 2.62e-01 76.4% 39.5%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.80e-01 96.4% 67.4%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 2.78e-01 70.9% 67.2%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.50e-01 90.9% 84.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 40.0 3.10e-01 89.1% 67.9%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 2.60e-01 70.9% 63.2%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.18e-01 100.0% 50.9%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 39.0 2.93e-01 83.6% 81.6%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.51 42.0 4.11e-01 100.0% 85.2%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 35.0 3.55e-01 85.5% 74.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 40.0 3.16e-01 89.1% 81.2%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 44.0 3.13e-01 100.0% 32.2%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 37.0 3.16e-01 85.5% 84.5%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.50 36.0 3.46e-01 80.0% 68.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030698 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.68 46.0 3.79e-01 70.9% 73.0%
3390111 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.67 47.0 4.04e-01 74.5% 57.8%
4029539 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 48.0 3.73e-01 80.0% 89.2%
4990232 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.63 49.0 3.45e-01 89.1% 44.7%
6882 223.4.1.1 ↗ a+b three layers › Profilin-like › YagB/YeeU/YfjZ-like › YagB/YeeU/YfjZ-like › CbeA_antitoxin 0.62 42.0 3.36e-01 70.9% 72.6%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 48.0 4.26e-01 87.3% 75.3%
5065158 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 48.0 3.60e-01 87.3% 47.3%
3217385 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.84e-01 78.2% 67.1%
5061635 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 47.0 2.76e-01 87.3% 17.1%
None — 0.60 48.0 3.61e-01 87.3% 62.3%
5791 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.60 50.0 3.92e-01 94.5% 51.3%
185643 223.2.1.11 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › AP3D1,Longin 0.60 47.0 3.47e-01 87.3% 55.5%
4827216 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 50.0 4.31e-01 96.4% 85.6%
5051015 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 46.0 3.35e-01 85.5% 63.2%
2552758 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.58 45.0 3.42e-01 85.5% 76.6%
4944411 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.37e-01 83.6% 43.0%
4990916 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.58 44.0 3.72e-01 87.3% 78.0%
3461881 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.58 45.0 3.58e-01 87.3% 49.6%
3795930 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 42.0 3.20e-01 81.8% 69.1%
5038289 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 44.0 3.37e-01 87.3% 68.9%
4066165 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 41.0 3.44e-01 78.2% 74.7%
3984091 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.56 45.0 3.77e-01 92.7% 76.2%
5044629 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.55e-01 89.1% 54.8%
4934442 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.56 45.0 3.49e-01 100.0% 75.3%
3243872 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 39.0 2.53e-01 76.4% 49.6%
3728783 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.55 44.0 3.36e-01 90.9% 42.9%
3639869 223.2.1.30 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N 0.55 40.0 2.98e-01 80.0% 83.1%
5046585 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.54 42.0 4.04e-01 89.1% 84.6%
4996848 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.42e-01 89.1% 61.7%
4989110 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.54 44.0 3.94e-01 92.7% 63.7%
3964304 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.54 42.0 3.68e-01 92.7% 55.7%
3596476 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 40.0 2.96e-01 80.0% 98.6%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.38e-01 87.3% 72.7%
3225197 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 42.0 2.83e-01 94.5% 25.7%
5045719 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.25e-01 87.3% 50.8%
5061442 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.19e-01 89.1% 84.2%
5016447 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.52 41.0 3.67e-01 94.5% 63.5%
5043502 231.1.2.6 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 0.51 43.0 2.75e-01 100.0% 76.4%
4975637 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.51 42.0 3.76e-01 100.0% 65.0%
1499696 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.51 41.0 3.98e-01 98.2% 97.0%
4973549 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.00e-01 85.5% 40.8%
4976967 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 2.93e-01 87.3% 67.3%
3242542 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 38.0 2.60e-01 89.1% 26.3%