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LC647030.1BDA81638.1X__00159

Bact-Vir

LC647030.1__BDA81638.1__X__00159

Identity

Accession:: LC647030 ↗
Kingdom:: phage

Quality

65.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-139_226-245

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23864.2 best	DUF7222	61.0	1.60e-16	41.2%	50.9%

D2 medium residues 140-225

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xvtC00	1.10.150.510	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family	0.64	34.0	3.60e-01	76.7%	57.0%
4g6dB02	6.10.140.1800	Special › Helix non-globular › Helix Hairpins ›	0.61	45.0	4.66e-01	79.1%	86.4%
1e7uA05	1.10.1070.11	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain	0.59	43.0	3.41e-01	79.1%	85.3%
3rv0C02	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.58	46.0	3.88e-01	86.0%	70.1%
1a04A02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	26.0	2.76e-01	80.2%	46.3%
3q5dA02	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.57	40.0	3.86e-01	75.6%	64.9%
4hehA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.56	31.0	3.23e-01	74.4%	56.6%
1aepA00	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.55	46.0	3.87e-01	95.3%	88.9%
1pw4A01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.53	39.0	3.01e-01	77.9%	86.1%
3u9rB02	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.52	41.0	2.97e-01	86.0%	87.1%
1vi0A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	37.0	3.17e-01	79.1%	78.6%
3kp9A01	1.20.1440.130	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain	0.50	37.0	2.97e-01	76.7%	45.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3187603	4336.2.1.3 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › COMPASS-Shg1	0.64	47.0	4.08e-01	80.2%	50.8%
3740294	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.64	52.0	4.36e-01	88.4%	55.3%
4993526	101.11.1.13 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › EMC6_arch	0.61	38.0	3.78e-01	73.3%	60.2%
3785926	101.1.15.3 ↗	alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung	0.60	43.0	3.89e-01	86.0%	55.7%
3756	601.20.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipophorin-III › Apolipophorin-III	0.55	46.0	3.87e-01	95.3%	88.9%
4027189	589.1.1.0 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain	0.52	38.0	3.80e-01	79.1%	100.0%

D3 medium residues 308-371

PDB