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LC647030.1__BDA81670.1__X__00191

Bact-Vir

LC647030.1__BDA81670.1__X__00191

Identity

Accession:
LC647030 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-100

TaxID: 2870751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-71
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.71e-01 98.3% 74.7%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 66.0 6.34e-01 98.3% 94.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 65.0 5.72e-01 100.0% 81.2%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 5.92e-01 100.0% 90.7%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.73 62.0 5.73e-01 98.3% 75.3%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 64.0 5.57e-01 100.0% 75.0%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.72 55.0 4.31e-01 84.5% 39.3%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 6.09e-01 96.6% 100.0%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 57.0 5.74e-01 96.6% 96.7%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.93e-01 98.3% 76.5%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.69 59.0 3.95e-01 100.0% 27.4%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.69 59.0 5.13e-01 100.0% 70.2%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 52.0 4.95e-01 91.4% 71.0%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 45.0 4.79e-01 89.7% 84.0%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.56e-01 100.0% 96.9%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.65 53.0 4.86e-01 93.1% 73.1%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 52.0 4.38e-01 100.0% 51.5%
1q1hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.92e-01 98.3% 76.5%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.63 52.0 4.44e-01 98.3% 92.4%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.62 42.0 3.85e-01 70.7% 51.9%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.61 50.0 4.37e-01 98.3% 63.9%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 49.0 3.22e-01 91.4% 62.6%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.60 50.0 4.73e-01 100.0% 76.7%
3gbhB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 48.0 3.31e-01 93.1% 48.8%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.59 45.0 3.96e-01 86.2% 64.4%
2lrdA00 1.10.10.1840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 39.0 3.90e-01 79.3% 67.2%
6ircA01 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.58 39.0 2.78e-01 72.4% 21.7%
1pu6A01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.58 47.0 4.12e-01 96.6% 85.1%
3bniB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 48.0 3.59e-01 100.0% 81.9%
1ea0A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 46.0 2.92e-01 100.0% 16.2%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.63e-01 100.0% 90.4%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 41.0 4.28e-01 84.5% 100.0%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 44.0 3.87e-01 100.0% 57.9%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.55 44.0 3.98e-01 98.3% 69.2%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.53 33.0 3.21e-01 72.4% 54.5%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.53 35.0 3.44e-01 81.0% 62.5%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.52 36.0 3.46e-01 72.4% 70.6%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 41.0 3.21e-01 94.8% 70.7%
4b8cJ01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.50 41.0 2.88e-01 91.4% 76.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944548 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.80 72.0 4.80e-01 100.0% 32.9%
3576763 101.1.1.332 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Nucleolin_bd 0.79 65.0 6.27e-01 93.1% 81.5%
5068621 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.79 68.0 6.32e-01 100.0% 76.0%
4381449 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 6.43e-01 98.3% 85.7%
3786864 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.78 68.0 5.94e-01 100.0% 93.3%
3217750 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.78 67.0 6.34e-01 98.3% 85.7%
3890162 101.1.2.526 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27602 0.78 68.0 6.22e-01 96.6% 92.0%
3416051 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.78 67.0 6.50e-01 98.3% 93.8%
3806070 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.78 61.0 6.44e-01 91.4% 100.0%
3740945 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.77 65.0 6.11e-01 100.0% 92.0%
4019411 101.21.1.0 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.76 66.0 6.13e-01 100.0% 90.7%
3328213 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.76 59.0 6.24e-01 91.4% 100.0%
3723084 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.76 65.0 6.16e-01 98.3% 94.3%
4304583 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 6.52e-01 100.0% 96.9%
4939370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 5.62e-01 100.0% 75.0%
4946048 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 5.92e-01 98.3% 88.7%
3618188 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.75 65.0 5.29e-01 98.3% 60.9%
3741636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 5.54e-01 98.3% 72.0%
5046227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 65.0 5.73e-01 98.3% 81.2%
5060192 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 64.0 6.21e-01 96.6% 90.8%
5047402 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 65.0 5.30e-01 100.0% 67.3%
3444283 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.74 60.0 6.24e-01 91.4% 98.1%
5003985 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.74 66.0 4.99e-01 100.0% 48.9%
4640327 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.74 65.0 5.01e-01 100.0% 65.4%
3398923 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.73 64.0 5.81e-01 100.0% 82.5%
4588402 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.72e-01 96.6% 98.7%
3837298 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.72 64.0 6.34e-01 100.0% 96.7%
5005257 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.72 63.0 4.53e-01 100.0% 34.1%
3663922 101.21.1.0 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.72 59.0 5.87e-01 96.6% 90.0%
3384684 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.50e-01 100.0% 85.9%
4996283 101.43.1.4 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › HTH_AsnC-type 0.72 60.0 5.83e-01 98.3% 83.1%
5058906 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.58e-01 98.3% 95.0%
5001690 3276.1.1.0 ↗ alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor 0.71 61.0 5.78e-01 98.3% 81.4%
3233735 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.71 60.0 5.43e-01 96.6% 85.0%
3261857 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.70 60.0 5.80e-01 98.3% 92.3%
5039859 6035.1.1.0 ↗ alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain 0.70 57.0 5.08e-01 98.3% 62.2%
2330433 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.70 60.0 4.50e-01 100.0% 43.7%
3616203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.06e-01 100.0% 70.5%
3270548 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.69 56.0 5.62e-01 96.6% 88.3%
3579249 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.18e-01 100.0% 78.8%
3404553 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.65e-01 98.3% 98.5%
4506962 101.1.1.51 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.68 55.0 5.17e-01 94.8% 78.7%
4252854 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 58.0 5.40e-01 98.3% 80.0%
5020266 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 57.0 4.89e-01 100.0% 61.1%
3217621 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.66 54.0 5.18e-01 98.3% 91.4%
5025218 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 54.0 3.29e-01 96.6% 28.1%
3427512 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.65 53.0 5.21e-01 98.3% 84.6%
3313157 101.1.2.524 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.64 52.0 4.93e-01 100.0% 96.0%
3462112 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.63 51.0 4.67e-01 98.3% 75.3%
3833695 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.62 47.0 4.14e-01 86.2% 52.6%
3936293 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.62 49.0 4.28e-01 89.7% 63.2%
3494116 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 46.0 3.26e-01 86.2% 82.4%
4615627 4973.1.1.1 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.61 47.0 4.49e-01 100.0% 72.0%
5017220 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.94e-01 96.6% 89.2%
3295625 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.60 50.0 4.24e-01 98.3% 55.2%
4929015 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 4.26e-01 87.9% 80.0%
3253015 6088.1.1.2 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › PF26051 0.58 47.0 4.37e-01 98.3% 80.0%
3943035 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.58 44.0 4.34e-01 89.7% 89.2%
4883033 1030.1.1.1 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.57 45.0 3.79e-01 93.1% 100.0%
3923696 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.57 39.0 3.43e-01 70.7% 55.6%
3359419 185.1.1.4 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Prolamin_like 0.56 46.0 4.23e-01 100.0% 71.8%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.56 46.0 3.01e-01 96.6% 24.6%
3630915 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.55 46.0 3.23e-01 100.0% 87.9%
4936146 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.55 43.0 4.40e-01 96.6% 100.0%
3780893 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.54 42.0 3.65e-01 91.4% 72.0%
4453525 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.53 37.0 3.64e-01 77.6% 67.7%
3236863 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 42.0 2.64e-01 100.0% 18.8%
3946106 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 39.0 2.39e-01 86.2% 49.5%