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LC648442.1__BDA82437.1__X__00182

Bact-Vir

LC648442.1__BDA82437.1__X__00182

Identity

Accession:
LC648442 ↗
Kingdom:
phage

Quality

68.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_vB_SsapH-Golestan-105-M

TaxID: 2872011

Cluster

View cluster (52 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-32_84-125
PDB
D2 medium residues 33-83
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 43.0 2.72e-01 74.5% 56.8%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 44.0 4.78e-01 80.4% 100.0%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.51e-01 76.5% 40.8%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.10e-01 76.5% 28.4%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.24e-01 76.5% 34.2%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 2.80e-01 76.5% 22.8%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.57 40.0 3.60e-01 78.4% 100.0%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 40.0 3.07e-01 76.5% 33.1%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.05e-01 76.5% 33.3%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 39.0 4.09e-01 76.5% 84.8%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.24e-01 78.4% 97.0%
3mk6B01 3.30.420.510 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 47.0 3.36e-01 98.0% 54.2%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 37.0 3.09e-01 74.5% 38.9%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 38.0 2.55e-01 74.5% 19.0%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.20e-01 94.1% 77.4%
2nyhA00 3.30.70.1240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains 0.53 44.0 3.49e-01 100.0% 63.8%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 2.72e-01 76.5% 78.4%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 33.0 2.51e-01 76.5% 24.6%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 2.92e-01 94.1% 46.0%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 2.79e-01 100.0% 25.4%
1kt0A02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 35.0 2.83e-01 76.5% 45.6%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.60e-01 78.4% 70.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029542 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 43.0 3.47e-01 76.5% 33.3%
3588721 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.63 45.0 3.48e-01 76.5% 35.7%
5018029 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 42.0 3.18e-01 76.5% 30.8%
5037641 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.60 41.0 3.34e-01 74.5% 89.1%
4998579 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.04e-01 82.4% 46.7%
2887049 54.1.1.1 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix 0.59 44.0 3.42e-01 84.3% 36.9%
3967720 223.1.1.53 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_6 0.58 39.0 3.07e-01 74.5% 30.4%
3588722 223.1.1.81 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.58 41.0 2.75e-01 76.5% 20.0%
3791028 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 49.0 3.80e-01 100.0% 71.2%
3302022 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 42.0 3.37e-01 78.4% 99.0%
4014965 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 43.0 3.63e-01 88.2% 82.0%
3555682 109.4.1.1397 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 0.57 42.0 2.39e-01 84.3% 9.0%
3608304 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 33.0 2.59e-01 76.5% 26.4%
3672395 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.56 37.0 2.41e-01 70.6% 71.3%
3985962 223.1.1.53 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_6 0.55 37.0 2.82e-01 74.5% 25.2%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 3.97e-01 100.0% 65.9%
5019276 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 38.0 2.47e-01 76.5% 16.1%
4846323 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 39.0 3.55e-01 78.4% 67.1%
3343216 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 40.0 3.02e-01 80.4% 80.0%
3488429 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 35.0 2.47e-01 70.6% 41.6%
3887913 223.2.1.40 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN 0.53 42.0 3.06e-01 100.0% 30.3%
138574 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 37.0 2.96e-01 74.5% 33.0%
3968523 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 37.0 2.88e-01 78.4% 36.5%
3588825 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.51 36.0 2.13e-01 78.4% 17.8%
4962558 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.51 44.0 2.98e-01 98.0% 88.4%
4560082 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 2.59e-01 80.4% 25.8%
3422969 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 37.0 2.92e-01 82.4% 83.2%