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LC667451.1__BDD79578.1__X__00059

Bact-Vir

LC667451.1__BDD79578.1__X__00059

Identity

Accession:
LC667451 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-74
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 49.0 4.79e-01 81.1% 68.3%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 35.0 3.25e-01 98.6% 40.0%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 45.0 5.00e-01 70.3% 96.3%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 46.0 4.83e-01 74.3% 92.5%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 4.68e-01 74.3% 79.4%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.64e-01 79.7% 74.4%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.62 49.0 4.20e-01 86.5% 63.0%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 29.0 2.92e-01 73.0% 46.6%
4c0kA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 38.0 2.88e-01 71.6% 32.8%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.56 30.0 3.35e-01 95.9% 65.5%
4b8cJ01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.55 44.0 3.39e-01 93.2% 86.9%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 3.99e-01 82.4% 90.2%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 46.0 3.77e-01 98.6% 67.1%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 36.0 3.66e-01 71.6% 76.3%
3fwbA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 37.0 3.67e-01 79.7% 86.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243495 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.73 49.0 5.49e-01 74.3% 94.5%
3358147 220.1.1.241 beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 0.70 55.0 3.81e-01 85.1% 34.4%
3219866 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.68 47.0 4.46e-01 73.0% 61.1%
2464 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 46.0 4.68e-01 73.0% 76.4%
4991386 2488.1.1.0 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.66 45.0 3.02e-01 71.6% 38.3%
3942167 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.65 46.0 4.95e-01 79.7% 91.7%
3589078 191.1.1.63 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N 0.64 46.0 3.42e-01 75.7% 31.6%
3974708 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.49e-01 91.9% 95.2%
3618188 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.61 46.0 4.11e-01 82.4% 70.9%
3449917 3546.1.1.1 alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N 0.59 41.0 4.43e-01 73.0% 90.0%
3518336 2004.5.1.14 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 0.59 48.0 3.58e-01 91.9% 100.0%
4397698 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.58 50.0 4.29e-01 97.3% 63.3%
3909658 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 48.0 4.13e-01 97.3% 89.6%
3966140 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.56 39.0 3.90e-01 73.0% 74.7%
3976702 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.56 37.0 3.71e-01 70.3% 68.8%
3187085 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 39.0 3.73e-01 74.3% 85.6%
3890108 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.55 44.0 3.94e-01 91.9% 71.8%
4271959 108.1.1.71 alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF5580_M 0.55 38.0 3.39e-01 74.3% 85.2%
4963130 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 43.0 2.68e-01 89.2% 30.9%
3282935 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.54 38.0 3.74e-01 74.3% 71.2%
4555031 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.54 38.0 3.80e-01 77.0% 87.5%
3978283 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.54 37.0 3.70e-01 73.0% 74.7%
4938388 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.53 42.0 3.08e-01 93.2% 69.0%
3289564 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.53 36.0 3.62e-01 71.6% 73.3%
4219793 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.52 44.0 3.58e-01 95.9% 60.7%
D2 medium residues 75-137
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 52.0 4.02e-01 84.1% 45.8%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 56.0 4.29e-01 95.2% 84.8%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 56.0 4.35e-01 95.2% 83.6%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 53.0 4.12e-01 95.2% 83.0%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 52.0 4.02e-01 95.2% 83.8%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 53.0 4.68e-01 98.4% 75.8%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 52.0 4.05e-01 95.2% 79.2%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.63 51.0 3.96e-01 90.5% 55.0%
1h97A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 46.0 3.58e-01 79.4% 50.3%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 54.0 4.89e-01 100.0% 80.9%
7eqeB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 44.0 3.24e-01 74.6% 57.4%
3hjlA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.62 50.0 4.57e-01 90.5% 97.6%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 49.0 3.87e-01 95.2% 86.4%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.60 42.0 3.00e-01 74.6% 26.3%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 49.0 3.90e-01 95.2% 85.1%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 3.87e-01 90.5% 82.7%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 41.0 3.32e-01 76.2% 36.2%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.58 41.0 4.10e-01 73.0% 90.8%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.58 44.0 4.58e-01 85.7% 91.2%
1ze0A01 1.20.120.700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ) 0.57 49.0 4.53e-01 98.4% 76.2%
1q0rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 47.0 3.08e-01 98.4% 19.9%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 45.0 4.22e-01 95.2% 95.3%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 3.26e-01 88.9% 30.4%
1wynA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.56 41.0 3.52e-01 85.7% 47.2%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 39.0 2.98e-01 76.2% 62.2%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 43.0 3.69e-01 87.3% 68.9%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.08e-01 100.0% 70.1%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.53 44.0 4.23e-01 100.0% 83.1%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.52 41.0 3.98e-01 87.3% 81.7%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 42.0 3.98e-01 95.2% 84.8%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.52 41.0 3.14e-01 90.5% 36.4%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.52 35.0 3.60e-01 81.0% 72.6%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.51 38.0 3.58e-01 84.1% 65.8%
3iu0A00 3.90.1360.10 Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase 0.50 43.0 2.75e-01 100.0% 53.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3298 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.67 56.0 4.33e-01 95.2% 85.5%
3208435 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 60.0 4.19e-01 100.0% 70.3%
4930113 102.1.2.37 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › T1RH-like_C 0.66 54.0 4.93e-01 100.0% 67.4%
3939929 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.64 53.0 3.39e-01 98.4% 64.8%
3441807 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 50.0 4.49e-01 92.1% 63.5%
4662540 633.31.1.0 alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase 0.62 49.0 4.71e-01 88.9% 82.7%
4999011 633.18.1.0 alpha bundles › Bromodomain-like › ExoU toxin C-terminal domain › ExoU toxin C-terminal domain 0.62 47.0 4.28e-01 82.5% 67.1%
51165 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.61 48.0 3.73e-01 90.5% 78.2%
3839303 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 42.0 4.08e-01 71.4% 72.9%
3231443 3758.1.1.0 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.61 49.0 3.27e-01 90.5% 60.8%
3934380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 50.0 4.88e-01 100.0% 82.9%
3588430 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.59 50.0 4.19e-01 98.4% 83.5%
3877040 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.58 47.0 4.46e-01 88.9% 89.3%
3703191 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.58 42.0 3.58e-01 76.2% 50.0%
4931674 4953.1.1.40 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › T1RH-like_C 0.57 47.0 4.29e-01 100.0% 66.7%
3610209 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 41.0 4.14e-01 76.2% 76.9%
4942190 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.56 44.0 4.09e-01 92.1% 72.7%
3505507 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.56 43.0 4.24e-01 87.3% 94.3%
3615514 109.4.1.621 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.55 43.0 3.11e-01 85.7% 31.4%
5055517 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.55 46.0 3.73e-01 100.0% 57.9%
3501219 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.55 46.0 4.02e-01 100.0% 71.4%
3991964 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 40.0 3.91e-01 76.2% 71.4%
3845882 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.55 45.0 3.54e-01 95.2% 47.6%
3527228 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 39.0 3.74e-01 76.2% 69.3%
3986322 4270.1.1.0 alpha bundles › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 0.55 45.0 4.19e-01 92.1% 72.5%
3715165 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 2.74e-01 90.5% 19.4%
3632767 109.34.1.2 alpha superhelices › Repetitive alpha hairpins › 26S proteasome subunit Rpn2 N-terminal domain › 26S proteasome subunit Rpn2 N-terminal domain › RPN2_N 0.51 40.0 2.66e-01 93.7% 30.0%