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LC667451.1__BDD79651.1__X__00132

Bact-Vir

LC667451.1__BDD79651.1__X__00132

Identity

Accession:
LC667451 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_FLC9

TaxID: 2906467

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-95_211-247
PDB
Domain cluster: rep: NC_041911.1__YP_009598907.1__FDH28_gp207__00214__D1-92_107-118_211-229
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25620.2 best PhiKZ_MCP 41.5 7.10e-11 87.9% 11.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 35.0 4.01e-01 90.9% 90.3%
3h9mA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 41.0 2.99e-01 83.3% 41.6%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.67e-01 87.9% 78.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023671 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.60 22.0 3.39e-01 84.8% 80.0%
4296415 304.109.1.4 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.54 36.0 3.96e-01 96.2% 88.0%
D2 medium residues 96-210
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t3qB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.66 43.0 3.61e-01 92.2% 39.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.64 33.0 4.17e-01 92.2% 86.2%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.63 58.0 4.95e-01 100.0% 83.3%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.63 39.0 3.94e-01 100.0% 61.4%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 34.0 4.32e-01 92.2% 92.2%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 32.0 4.06e-01 92.2% 100.0%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.58 50.0 3.78e-01 94.8% 74.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.75e-01 99.1% 87.3%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 36.0 3.09e-01 95.7% 38.5%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 38.0 3.70e-01 100.0% 60.2%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 36.0 2.75e-01 94.8% 25.8%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 45.0 4.21e-01 89.6% 87.3%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 34.0 3.29e-01 70.4% 53.4%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.55 37.0 3.62e-01 90.4% 62.3%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.55 49.0 3.13e-01 98.3% 32.9%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 34.0 2.65e-01 95.7% 25.5%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.54 41.0 3.77e-01 100.0% 62.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 29.0 3.41e-01 100.0% 81.2%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 44.0 3.30e-01 92.2% 52.3%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.52 46.0 3.51e-01 98.3% 79.3%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.08e-01 71.3% 57.8%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.52 39.0 3.84e-01 97.4% 74.4%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 34.0 2.62e-01 96.5% 27.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 3.29e-01 99.1% 87.3%
3hrdB01 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 39.0 3.49e-01 82.6% 96.3%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 4.08e-01 93.9% 86.4%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.50 22.0 3.06e-01 71.3% 84.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4445572 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.60 47.0 4.50e-01 98.3% 73.1%
3945683 7503.1.1.14 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF3313 0.59 41.0 3.48e-01 70.4% 86.8%
4225360 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 4.38e-01 80.9% 73.6%
3936894 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.58 50.0 4.00e-01 93.0% 76.5%
4254174 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.58 42.0 3.93e-01 98.3% 60.0%
3504023 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.57 49.0 3.85e-01 94.8% 78.0%
3843777 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.57 51.0 3.97e-01 98.3% 78.0%
3366806 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.56 49.0 3.82e-01 94.8% 73.9%
5054962 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 31.0 3.13e-01 87.0% 50.0%
3964155 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 48.0 3.67e-01 94.8% 53.6%
3379956 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.55 46.0 3.67e-01 91.3% 72.3%
2765234 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.54 39.0 4.27e-01 75.7% 92.8%
5034777 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.48e-01 77.4% 84.4%
3508261 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.54 48.0 3.89e-01 100.0% 60.0%
3787831 243.1.1.50 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.53 47.0 3.68e-01 99.1% 53.1%
3568625 883.1.1.6 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.53 42.0 3.96e-01 87.8% 88.3%
3413325 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 38.0 2.63e-01 75.7% 27.4%
3217156 243.1.1.46 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.52 37.0 3.47e-01 73.0% 87.9%
3837825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.57e-01 97.4% 59.1%
3176757 243.1.1.50 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.52 45.0 3.86e-01 98.3% 88.6%
3798012 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.52 45.0 3.51e-01 96.5% 76.9%
3411391 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.52 45.0 3.17e-01 96.5% 72.3%
5054968 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.20e-01 73.0% 51.0%
3958465 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 42.0 3.92e-01 90.4% 80.7%
4010500 7503.1.1.24 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF25851 0.51 37.0 3.37e-01 73.9% 71.4%
3850704 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 46.0 3.34e-01 98.3% 82.9%
5065294 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.50 45.0 3.95e-01 98.3% 83.5%