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LC667451.1__BDD79761.1__X__00242

Bact-Vir

LC667451.1__BDD79761.1__X__00242

Identity

Accession:
LC667451 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_FLC9

TaxID: 2906467

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-77
PDB
Domain cluster: rep: ON526970.1__USH44660.1__SEA_BROPLEASE_76__00076__D16-83
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 42.0 3.69e-01 100.0% 35.9%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 62.0 6.16e-01 91.5% 80.8%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 61.0 6.13e-01 91.5% 81.9%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 56.0 5.76e-01 91.5% 86.6%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 59.0 5.99e-01 100.0% 95.6%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 62.0 5.15e-01 100.0% 78.6%
1y6uA01 3.90.105.50 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › 0.69 45.0 5.11e-01 77.5% 98.0%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 53.0 5.10e-01 91.5% 74.1%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 61.0 5.01e-01 100.0% 75.4%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 60.0 4.85e-01 100.0% 90.0%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.68 36.0 3.39e-01 84.5% 42.5%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 59.0 5.08e-01 98.6% 87.6%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.66 56.0 5.46e-01 94.4% 84.6%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 58.0 5.20e-01 98.6% 89.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 36.0 3.78e-01 78.9% 61.5%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 35.0 4.03e-01 76.1% 76.5%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 38.0 4.00e-01 78.9% 66.7%
6lpfA01 1.10.730.20 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › 0.62 43.0 3.27e-01 88.7% 31.3%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 37.0 3.87e-01 74.6% 66.2%
3pl0B00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.61 44.0 3.04e-01 77.5% 86.5%
2vrnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 47.0 3.50e-01 84.5% 88.1%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 48.0 4.83e-01 88.7% 91.4%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 38.0 4.08e-01 84.5% 74.6%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 38.0 3.35e-01 80.3% 44.7%
1vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.58 51.0 3.93e-01 97.2% 98.1%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 39.0 3.74e-01 84.5% 62.0%
2wvnA01 1.20.120.1020 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Prion-inhibition and propagation, HeLo domain 0.57 51.0 3.61e-01 98.6% 67.6%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.08e-01 98.6% 56.7%
4qtzA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 43.0 2.87e-01 84.5% 71.7%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 37.0 3.55e-01 78.9% 58.3%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 44.0 4.02e-01 84.5% 84.0%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.02e-01 87.3% 65.9%
3fseA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.56 43.0 3.20e-01 85.9% 80.7%
1a2zA00 3.40.630.20 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Peptidase C15, pyroglutamyl peptidase I-like 0.56 46.0 3.40e-01 97.2% 90.5%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.55e-01 87.3% 52.1%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.60e-01 90.1% 58.0%
3ll3B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 2.83e-01 80.3% 95.9%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.36e-01 84.5% 56.2%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 3.68e-01 95.8% 57.4%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.51e-01 91.5% 53.9%
3k7lA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.53 43.0 3.28e-01 95.8% 76.1%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 38.0 3.21e-01 78.9% 45.4%
2kz6A01 6.10.140.1310 Special › Helix non-globular › Helix Hairpins › 0.53 42.0 4.00e-01 84.5% 100.0%
3na8A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 43.0 2.86e-01 91.5% 27.5%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.52 36.0 3.82e-01 74.6% 88.1%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 35.0 3.28e-01 71.8% 57.0%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.54e-01 83.1% 61.3%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 47.0 4.12e-01 100.0% 74.5%
3c1yA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 33.0 3.51e-01 83.1% 76.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.89 76.0 7.29e-01 100.0% 80.0%
3954861 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.88 64.0 7.26e-01 85.9% 98.2%
4668445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.83 59.0 6.61e-01 81.7% 96.4%
4929856 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.83 64.0 5.92e-01 91.5% 65.6%
3589467 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 57.0 5.37e-01 83.1% 60.0%
3506058 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 45.0 3.91e-01 100.0% 39.0%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 64.0 5.89e-01 91.5% 65.6%
3976864 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.82 72.0 7.13e-01 98.6% 89.3%
5075144 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 74.0 7.28e-01 100.0% 100.0%
4259368 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.79 43.0 3.56e-01 100.0% 32.5%
3637098 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.79 44.0 3.51e-01 100.0% 30.1%
3359244 192.8.1.342 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.79 40.0 4.20e-01 94.4% 55.4%
3288205 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 60.0 5.77e-01 91.5% 72.5%
4977598 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.77 44.0 3.71e-01 100.0% 36.4%
4008376 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 58.0 6.16e-01 83.1% 95.0%
3288603 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 59.0 5.81e-01 90.1% 78.7%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 44.0 3.65e-01 100.0% 35.7%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 57.0 5.55e-01 91.5% 72.5%
3350649 192.8.1.342 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.75 43.0 3.84e-01 100.0% 42.1%
None — 0.75 58.0 5.89e-01 91.5% 84.3%
3741919 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 43.0 3.83e-01 100.0% 42.0%
5073620 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 55.0 5.70e-01 81.7% 87.7%
4117084 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 55.0 4.92e-01 83.1% 58.0%
171609 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 65.0 5.25e-01 100.0% 68.4%
3966276 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 65.0 5.55e-01 100.0% 87.3%
3282255 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 64.0 5.55e-01 100.0% 82.4%
4094061 101.1.9.98 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.71 58.0 5.50e-01 91.5% 75.3%
3629045 601.2.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.70 41.0 3.37e-01 94.4% 32.8%
4536234 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.69 61.0 5.24e-01 100.0% 82.6%
3009971 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 40.0 3.71e-01 100.0% 45.5%
3728047 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.68 52.0 5.38e-01 80.3% 92.3%
3291218 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 61.0 4.98e-01 100.0% 67.7%
4378584 3843.1.1.1 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.68 49.0 4.24e-01 74.6% 85.7%
1844183 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 59.0 4.81e-01 98.6% 73.5%
4031520 101.1.9.64 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_23 0.66 51.0 5.31e-01 88.7% 92.3%
5003580 2003.1.2.302 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › PF27252 0.64 57.0 3.84e-01 100.0% 55.0%
4056248 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 50.0 4.10e-01 90.1% 45.9%
3976170 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.63 51.0 5.19e-01 95.8% 94.3%
4270095 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 44.0 4.50e-01 83.1% 77.1%
3688375 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 52.0 4.87e-01 93.0% 77.3%
3640935 3543.1.1.4 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.61 53.0 3.74e-01 98.6% 68.1%
3274594 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.61 53.0 3.80e-01 95.8% 45.5%
4025555 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 41.0 2.48e-01 76.1% 13.6%
3781238 604.5.1.31 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.57 50.0 3.24e-01 100.0% 27.4%
3948669 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.56 48.0 4.13e-01 95.8% 63.5%
3380869 109.4.1.450 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.56 46.0 2.90e-01 88.7% 31.6%
4426315 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.56 48.0 2.84e-01 94.4% 79.1%
4962776 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 46.0 4.10e-01 93.0% 90.5%
4968989 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.54e-01 73.2% 57.6%
3598732 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 48.0 4.21e-01 98.6% 94.2%
4927802 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.46e-01 100.0% 41.9%
3164630 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.53 45.0 2.74e-01 91.5% 49.4%
3845410 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 49.0 4.24e-01 100.0% 74.3%
2790593 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 43.0 3.47e-01 91.5% 51.7%
5059855 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 43.0 3.56e-01 98.6% 48.6%
3564807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 45.0 3.49e-01 94.4% 60.6%
3957538 101.1.2.231 ↗ alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.52 41.0 3.35e-01 91.5% 56.0%
4961047 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 38.0 3.68e-01 91.5% 69.4%