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LC667451.1__BDD79839.1__X__00320

Bact-Vir

LC667451.1__BDD79839.1__X__00320

Identity

Accession:
LC667451 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_FLC9

TaxID: 2906467

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-71
PDB
Domain cluster: rep: MF063068.1__ARV77298.1__NOXIFER_129__00129__D7-64
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 33.7 3.60e-08 96.9% 22.3%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.72 43.0 3.53e-01 76.6% 34.2%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 45.0 3.22e-01 100.0% 26.0%
2l97A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 43.0 3.79e-01 76.6% 60.6%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.54e-01 100.0% 73.6%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 50.0 3.74e-01 95.3% 57.1%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.56 46.0 3.73e-01 95.3% 50.7%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 2.98e-01 100.0% 35.0%
1ciyA02 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.56 44.0 3.32e-01 95.3% 95.4%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 36.0 2.84e-01 75.0% 29.8%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 37.0 3.92e-01 90.6% 86.3%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 47.0 3.70e-01 95.3% 45.2%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 48.0 3.74e-01 100.0% 77.6%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.54 44.0 3.83e-01 98.4% 56.9%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.54 45.0 3.81e-01 92.2% 57.9%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.54 44.0 3.99e-01 100.0% 77.0%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 3.48e-01 100.0% 47.4%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.54 45.0 3.41e-01 100.0% 96.6%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.20e-01 100.0% 78.4%
2x3fA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.53 41.0 3.58e-01 84.4% 100.0%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.38e-01 82.8% 55.0%
1gg3A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.63e-01 78.1% 73.1%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.53 42.0 3.68e-01 89.1% 99.0%
1atnD00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 39.0 2.72e-01 84.4% 50.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 43.0 3.46e-01 96.9% 85.7%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.58e-01 100.0% 74.1%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 39.0 3.40e-01 82.8% 73.1%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 43.0 3.39e-01 100.0% 78.0%
4mb4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.92e-01 100.0% 72.2%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.62e-01 98.4% 76.0%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 41.0 3.57e-01 100.0% 56.7%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 43.0 3.90e-01 100.0% 88.2%
2dc1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 3.18e-01 98.4% 48.5%
3ednA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 44.0 3.31e-01 100.0% 89.6%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.80e-01 98.4% 74.7%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 44.0 3.88e-01 100.0% 80.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3412668 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.66 44.0 3.50e-01 71.9% 36.7%
3670792 243.3.1.67 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.63 54.0 5.38e-01 100.0% 93.8%
3511017 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.61 46.0 3.85e-01 82.8% 69.6%
4969397 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.60 45.0 3.78e-01 82.8% 73.9%
3929659 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.60 45.0 3.60e-01 82.8% 62.2%
4012633 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.59 44.0 3.28e-01 79.7% 30.9%
3781523 243.1.1.42 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 0.59 50.0 3.97e-01 100.0% 78.3%
3994413 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 41.0 3.21e-01 73.4% 60.7%
3898106 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 40.0 3.15e-01 70.3% 92.3%
4842604 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.58 50.0 4.38e-01 95.3% 65.6%
4407396 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.58 50.0 3.56e-01 95.3% 33.5%
4888666 243.5.1.4 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.58 50.0 4.43e-01 100.0% 66.7%
3931768 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 43.0 3.52e-01 82.8% 60.8%
4938402 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.57 47.0 4.15e-01 100.0% 63.2%
4994856 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.56 49.0 4.15e-01 100.0% 86.4%
4162152 109.4.1.1907 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xin 0.56 42.0 2.42e-01 81.2% 28.8%
4641929 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 45.0 3.79e-01 95.3% 51.2%
3496964 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.56 42.0 3.47e-01 82.8% 64.0%
4951631 243.3.1.37 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4901 0.56 48.0 4.05e-01 100.0% 56.5%
3445705 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 39.0 3.83e-01 84.4% 70.0%
3996872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.90e-01 79.7% 77.0%
4418043 207.12.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region 0.55 49.0 2.98e-01 98.4% 23.3%
3435224 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 44.0 4.41e-01 100.0% 92.3%
3963036 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.55 45.0 3.96e-01 100.0% 61.0%
3274129 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 37.0 2.66e-01 75.0% 21.9%
1031959 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.54 43.0 3.73e-01 90.6% 88.0%
2137686 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.54 47.0 3.76e-01 100.0% 71.6%
3305439 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 2.89e-01 100.0% 22.3%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 3.82e-01 96.9% 73.9%
4321871 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.53 45.0 3.87e-01 100.0% 60.0%
4928022 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.88e-01 100.0% 73.4%
3719015 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.52 36.0 2.62e-01 71.9% 71.1%
3545017 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 38.0 2.30e-01 84.4% 10.5%
3510736 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.51 38.0 3.25e-01 82.8% 68.7%
4358798 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 38.0 3.62e-01 95.3% 68.0%
3922865 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 4.04e-01 100.0% 90.0%
3471893 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.51 40.0 3.90e-01 100.0% 77.1%
4542712 3698.1.1.2 ↗ beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.51 34.0 2.51e-01 70.3% 70.0%
D2 high residues 73-157
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 42.6 7.10e-11 100.0% 27.7%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.96e-01 78.8% 82.4%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 4.20e-01 76.5% 75.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.60 40.0 3.87e-01 94.1% 61.7%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 4.15e-01 72.9% 86.7%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.58 42.0 3.38e-01 77.6% 72.7%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.85e-01 78.8% 82.5%
4czuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 33.0 3.22e-01 74.1% 48.9%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 39.0 4.01e-01 75.3% 75.9%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 43.0 3.48e-01 84.7% 82.6%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 3.52e-01 74.1% 88.1%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.69e-01 76.5% 71.9%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 33.0 3.20e-01 91.8% 50.0%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.67e-01 95.3% 98.6%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 38.0 3.39e-01 74.1% 85.2%
1lxmA04 2.60.40.1380 Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 0.54 41.0 4.31e-01 92.9% 90.8%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.54 47.0 3.93e-01 98.8% 92.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.82e-01 80.0% 84.1%
6bnzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 3.15e-01 94.1% 43.6%
7cymA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 44.0 4.10e-01 94.1% 100.0%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.52 35.0 3.11e-01 71.8% 46.0%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.52 43.0 3.89e-01 94.1% 84.0%
4apxB02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 44.0 4.04e-01 97.6% 98.3%
1zvnA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 39.0 3.82e-01 81.2% 100.0%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.51 38.0 3.66e-01 78.8% 100.0%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 3.04e-01 97.6% 28.7%
6twjA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.51 41.0 3.14e-01 91.8% 46.7%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 41.0 2.97e-01 89.4% 50.4%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 3.31e-01 77.6% 76.4%
3ubfA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 42.0 3.97e-01 94.1% 92.5%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.50 31.0 3.18e-01 70.6% 62.7%
4ak2A01 2.60.40.2720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.93e-01 97.6% 95.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4383502 3414.1.1.10 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Spiralin 0.65 58.0 5.47e-01 100.0% 96.2%
4090113 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.63 53.0 5.01e-01 95.3% 79.0%
5082037 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 34.0 3.30e-01 71.8% 51.1%
3966072 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.57 45.0 4.27e-01 89.4% 88.0%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.57 46.0 4.27e-01 90.6% 89.1%
4272501 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 47.0 4.43e-01 94.1% 79.0%
3534702 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.56 39.0 3.69e-01 74.1% 72.7%
3940929 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.56 40.0 2.66e-01 77.6% 18.5%
3282999 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.27e-01 82.4% 45.5%
3857251 1134.1.2.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.55 39.0 3.63e-01 74.1% 72.7%
1397 11.1.1.319 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HL_N-beta 0.54 41.0 4.27e-01 92.9% 88.5%
3586559 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.85e-01 76.5% 84.7%
3204249 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 39.0 2.54e-01 78.8% 19.5%
3928536 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 41.0 4.26e-01 91.8% 93.8%
3867075 3569.2.1.3 ↗ extended segments › Epidermal growth factor receptor transmembrane-juxtamembrane segment-like › Insulin receptor transmembrane segment › Insulin receptor transmembrane segment › Cadherin_3 0.52 43.0 3.06e-01 94.1% 41.1%
4995934 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 38.0 2.52e-01 77.6% 26.5%
3245893 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.50e-01 80.0% 100.0%
3756992 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.51 41.0 3.46e-01 89.4% 93.3%
3592374 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 2.91e-01 92.9% 97.0%
3507141 11.1.1.550 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 0.50 41.0 3.81e-01 92.9% 98.3%
D3 high residues 184-288
PDB
Domain cluster: rep: MW879341.1__QXO10940.1__pEaSNUABM54_00114__00114__D183-275
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 42.5 7.90e-11 100.0% 33.5%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.62 30.0 4.14e-01 81.0% 96.1%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 30.0 3.48e-01 80.0% 63.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 38.0 2.86e-01 100.0% 26.5%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 40.0 3.54e-01 72.4% 80.1%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 39.0 2.83e-01 100.0% 25.5%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 33.0 3.37e-01 77.1% 60.2%
4mb4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 3.95e-01 100.0% 87.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.53e-01 89.5% 82.6%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 30.0 3.56e-01 80.0% 86.6%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 30.0 3.12e-01 71.4% 60.0%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.98e-01 97.1% 76.9%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 35.0 3.58e-01 100.0% 72.1%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.50 40.0 3.67e-01 100.0% 66.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742032 211.1.1.12 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Pfk_N 0.64 42.0 4.44e-01 100.0% 76.7%
4641929 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.62 38.0 3.63e-01 99.0% 51.2%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.61 32.0 3.98e-01 81.0% 85.0%
4014830 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 33.0 4.24e-01 83.8% 98.2%
3686733 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 32.0 3.87e-01 98.1% 89.2%
3939096 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 32.0 3.71e-01 100.0% 78.7%
4268049 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 39.0 2.50e-01 73.3% 31.1%
3803892 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.54 33.0 3.82e-01 90.5% 95.4%
3935229 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 4.06e-01 98.1% 91.3%
3857251 1134.1.2.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.53 35.0 3.52e-01 85.7% 65.5%
184884 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.52 29.0 3.61e-01 82.9% 93.3%
3876669 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 36.0 3.50e-01 81.0% 63.5%
3261599 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 40.0 3.28e-01 100.0% 43.6%
3427044 4.1.1.36 ↗ beta barrels › SH3 › SH3 › SH3 › FeThRed_A 0.51 36.0 3.84e-01 84.8% 85.6%
3620302 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 36.0 2.63e-01 73.3% 71.6%