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LC667451.1__BDD79845.1__X__00326

Bact-Vir

LC667451.1__BDD79845.1__X__00326

Identity

Accession:
LC667451 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_FLC9

TaxID: 2906467

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70
PDB
Domain cluster: rep: S2_005_003_R2_scaffold_22_prodigal-single.1__X__X__00083__D10-74
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 48.0 3.91e-01 100.0% 41.2%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 36.0 3.25e-01 75.0% 39.1%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.61 48.0 3.68e-01 100.0% 35.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 39.0 3.96e-01 98.3% 67.8%
2dkhA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 54.0 3.51e-01 100.0% 52.1%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 4.04e-01 78.3% 66.2%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 52.0 4.46e-01 100.0% 64.9%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.59 49.0 3.96e-01 100.0% 99.2%
1p38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 41.0 3.18e-01 100.0% 31.9%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 45.0 3.38e-01 100.0% 32.7%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.02e-01 100.0% 74.3%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 45.0 3.98e-01 88.3% 63.7%
1golA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 3.38e-01 100.0% 39.1%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 3.65e-01 100.0% 55.6%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 50.0 3.02e-01 100.0% 34.3%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.74e-01 100.0% 68.4%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 41.0 3.15e-01 83.3% 38.0%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.54 43.0 3.89e-01 100.0% 63.2%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.61e-01 100.0% 45.0%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.54 45.0 3.84e-01 100.0% 56.9%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.60e-01 90.0% 80.8%
2kzfA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 44.0 3.78e-01 100.0% 73.6%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 47.0 3.07e-01 100.0% 59.8%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 41.0 2.99e-01 95.0% 40.8%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 3.42e-01 81.7% 58.7%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.52 44.0 3.54e-01 100.0% 89.0%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.52 44.0 3.36e-01 100.0% 90.2%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 2.99e-01 83.3% 69.0%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 36.0 3.16e-01 95.0% 46.9%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.50 35.0 3.19e-01 78.3% 52.3%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.50 42.0 3.76e-01 93.3% 72.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3400775 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 55.0 4.38e-01 100.0% 80.8%
3932783 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.63 47.0 2.99e-01 80.0% 24.1%
4930846 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.63 41.0 4.13e-01 73.3% 66.7%
4951451 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 49.0 3.71e-01 100.0% 35.9%
2132960 2.2.1.4 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertussis_S2S3 0.61 45.0 3.66e-01 90.0% 40.9%
3408475 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.61 42.0 4.08e-01 100.0% 62.9%
3676791 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 4.27e-01 81.7% 70.7%
3222814 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 51.0 4.72e-01 100.0% 73.8%
4461912 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 52.0 4.32e-01 100.0% 59.1%
3383138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 39.0 3.63e-01 81.7% 52.6%
3820010 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.58 45.0 3.42e-01 100.0% 33.1%
4851646 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.58 49.0 3.72e-01 100.0% 52.9%
4517464 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 51.0 2.96e-01 100.0% 16.6%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 41.0 3.90e-01 95.0% 61.3%
3681185 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.57 42.0 2.88e-01 80.0% 39.6%
3706739 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 43.0 3.20e-01 83.3% 52.1%
3695678 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.57 49.0 2.97e-01 100.0% 14.8%
3619203 211.1.1.29 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Chromadorea_ALT 0.57 38.0 4.08e-01 96.7% 84.0%
3759486 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.57 40.0 3.67e-01 75.0% 57.5%
3662984 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 41.0 3.69e-01 81.7% 55.3%
5001386 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 48.0 4.30e-01 100.0% 67.1%
3470145 2.1.1.23 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.56 39.0 3.83e-01 76.7% 65.7%
1349792 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.56 50.0 3.67e-01 100.0% 89.3%
None — 0.56 40.0 2.53e-01 78.3% 15.8%
4033933 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 46.0 3.88e-01 100.0% 66.1%
3435863 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 39.0 2.76e-01 78.3% 24.2%
3704942 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 45.0 3.50e-01 100.0% 40.7%
4137586 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.55 44.0 3.38e-01 93.3% 53.5%
3445705 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.88e-01 81.7% 70.0%
3444419 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 46.0 3.94e-01 96.7% 64.0%
3741704 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 44.0 3.62e-01 100.0% 77.7%
3716605 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 43.0 3.26e-01 100.0% 35.0%
3733913 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.97e-01 100.0% 37.9%
3948605 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 43.0 3.12e-01 95.0% 48.4%
3365937 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.53 34.0 3.43e-01 70.0% 65.0%
3287532 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.21e-01 80.0% 46.0%
3573614 310.3.1.18 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PAP_PilO 0.52 45.0 4.06e-01 100.0% 78.8%
None — 0.51 37.0 2.05e-01 80.0% 5.3%
3693921 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.51 41.0 2.56e-01 100.0% 20.9%
3700082 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 33.0 2.09e-01 85.0% 10.0%
4021441 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.22e-01 90.0% 61.5%
3712208 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.50 40.0 2.75e-01 100.0% 34.7%
D2 high residues 78-161
PDB
Domain cluster: rep: NC_028899.1__YP_009207974.1__AVU11_gp170__00176__D88-154
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 29.0 3.32e-01 89.3% 67.2%
1qwyA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 39.0 3.19e-01 77.4% 83.7%
1g44C04 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 29.0 3.55e-01 75.0% 100.0%
1lxmA04 2.60.40.1380 Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 0.53 39.0 4.09e-01 92.9% 88.2%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.06e-01 82.1% 100.0%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.82e-01 82.1% 92.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 28.0 3.08e-01 72.6% 63.6%
3m1cA01 3.10.360.40 Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › 0.51 27.0 3.15e-01 73.8% 75.0%
4d8oA03 2.60.40.2660 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.42e-01 82.1% 92.1%
4fajA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 43.0 3.54e-01 100.0% 70.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4323814 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.68 57.0 5.54e-01 92.9% 83.0%
4261318 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.67 56.0 5.31e-01 91.7% 82.7%
4416594 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.66 56.0 5.21e-01 92.9% 76.0%
3835163 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.65 53.0 4.96e-01 90.5% 89.5%
3316533 523.1.1.0 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain 0.65 52.0 4.90e-01 89.3% 89.5%
3481213 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 4.29e-01 82.1% 97.4%
4126405 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.60 51.0 4.89e-01 97.6% 81.0%
4940436 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.58 46.0 4.50e-01 84.5% 86.7%
3992373 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.55 41.0 4.01e-01 91.7% 71.6%
3940929 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.53 42.0 2.73e-01 86.9% 34.7%