Back to structures

LC667451.1__BDD79870.1__X__00351

Bact-Vir

LC667451.1__BDD79870.1__X__00351

Identity

Accession:
LC667451 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-121
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 52.0 4.49e-01 73.0% 50.4%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 63.0 5.44e-01 100.0% 90.4%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.69 48.0 4.47e-01 70.8% 64.8%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.66 47.0 4.99e-01 75.3% 96.2%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.66 54.0 4.92e-01 87.6% 67.8%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.65 57.0 4.61e-01 95.5% 81.7%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 51.0 4.61e-01 84.3% 83.1%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 47.0 4.05e-01 79.8% 68.4%
1iyrA00 1.10.1490.10 Mainly Alpha › Orthogonal Bundle › Dna Fragmentation Factor Alpha Subunit; Chain: A; › C-terminal domain of DFF45/ICAD (DFF-C domain) 0.59 40.0 4.16e-01 76.4% 74.7%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 4.24e-01 78.7% 100.0%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 42.0 4.12e-01 77.5% 83.8%
2gwcA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.57 43.0 2.82e-01 82.0% 92.2%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 41.0 3.67e-01 80.9% 53.0%
1xx7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 41.0 3.28e-01 79.8% 48.3%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.22e-01 83.1% 45.0%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 37.0 3.50e-01 71.9% 81.3%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 37.0 3.13e-01 74.2% 50.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284147 150.5.1.52 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE 0.75 60.0 5.70e-01 85.4% 75.2%
3291596 150.5.1.52 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE 0.73 59.0 5.67e-01 85.4% 79.0%
3476098 603.3.1.1 alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein › APP_E2 0.72 58.0 4.41e-01 85.4% 39.5%
1713219 601.4.1.5 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › HBM 0.72 65.0 6.03e-01 100.0% 90.3%
3954313 150.5.1.52 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE 0.71 54.0 5.35e-01 80.9% 78.9%
3638435 1073.1.1.14 alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › LMBR1 0.69 53.0 4.85e-01 80.9% 70.2%
3641055 109.4.1.436 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nipped-B_C 0.68 54.0 3.84e-01 89.9% 29.4%
2448764 109.4.1.249 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ComR_TPR 0.66 54.0 4.00e-01 89.9% 82.1%
3409714 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.65 54.0 5.17e-01 87.6% 92.0%
3387995 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.65 54.0 4.15e-01 91.0% 81.5%
4027208 604.1.1.59 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF6827 0.63 55.0 4.57e-01 93.3% 87.6%
3472545 109.4.1.1341 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C 0.60 53.0 3.24e-01 95.5% 16.3%
3909893 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 49.0 4.23e-01 89.9% 82.1%
4497185 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.59 43.0 3.99e-01 77.5% 65.8%
3478708 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.59 44.0 3.12e-01 79.8% 53.2%
3973478 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.56 36.0 2.95e-01 70.8% 33.0%
4024003 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 45.0 3.82e-01 87.6% 80.0%
3666716 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.52 39.0 4.09e-01 83.1% 91.3%
D2 high residues 124-202
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.68 51.0 3.98e-01 79.7% 41.6%
4ikhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 61.0 5.20e-01 98.7% 75.6%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.67 52.0 4.39e-01 83.5% 52.3%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.67 52.0 5.23e-01 83.5% 93.7%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 51.0 4.82e-01 83.5% 80.6%
3ibvB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 56.0 3.22e-01 98.7% 11.3%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 45.0 3.68e-01 72.2% 63.3%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 49.0 5.00e-01 97.5% 86.7%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 57.0 5.14e-01 100.0% 78.9%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 43.0 4.07e-01 75.9% 57.1%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.63 49.0 4.44e-01 83.5% 67.0%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 52.0 4.43e-01 96.2% 72.8%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.61 52.0 4.46e-01 97.5% 80.6%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 53.0 4.56e-01 98.7% 87.4%
2yv7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 51.0 4.33e-01 97.5% 97.8%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.59 53.0 4.60e-01 98.7% 65.8%
3sp1A02 1.20.120.1910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain 0.59 44.0 3.66e-01 92.4% 43.0%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.59 44.0 4.39e-01 79.7% 96.2%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.58 47.0 3.72e-01 87.3% 67.5%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.58 50.0 4.29e-01 100.0% 59.8%
1nd7A01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.58 50.0 3.90e-01 100.0% 49.7%
2j49A00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.57 47.0 4.08e-01 94.9% 66.4%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 48.0 4.23e-01 100.0% 62.7%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.54 48.0 4.29e-01 100.0% 76.7%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 48.0 3.86e-01 100.0% 61.1%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.54 42.0 3.34e-01 84.8% 62.9%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 44.0 4.30e-01 100.0% 80.5%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.54 48.0 4.26e-01 100.0% 71.9%
3rkoF01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.53 43.0 3.44e-01 88.6% 69.4%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.79e-01 88.6% 77.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384514 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.70 47.0 4.84e-01 83.5% 73.3%
3373348 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.67 49.0 3.50e-01 79.7% 55.7%
3925844 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.65 52.0 3.66e-01 89.9% 27.9%
3669330 604.1.1.148 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N 0.64 49.0 4.81e-01 83.5% 88.2%
3452753 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.64 57.0 4.37e-01 98.7% 74.3%
3728912 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 56.0 3.41e-01 97.5% 23.1%
4010998 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.63 48.0 3.69e-01 100.0% 36.6%
5029314 3960.1.1.0 alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.62 43.0 3.92e-01 72.2% 88.0%
3229748 1134.1.1.9 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 0.62 48.0 4.70e-01 83.5% 78.8%
4000504 109.4.1.1954 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BP28CT, HEAT_HEATR1 0.62 54.0 3.09e-01 98.7% 25.7%
3461190 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.61 52.0 4.87e-01 97.5% 87.0%
4026893 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 54.0 4.03e-01 100.0% 50.2%
3238182 109.4.1.243 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zmiz1_N 0.61 50.0 4.55e-01 89.9% 78.1%
5008677 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.60 45.0 3.64e-01 78.5% 46.0%
3367669 109.4.1.1556 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT, PDS5 0.60 50.0 4.01e-01 96.2% 46.3%
3319968 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 49.0 5.17e-01 100.0% 100.0%
4525372 601.18.1.24 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Spore_YpjB 0.60 44.0 4.28e-01 92.4% 70.0%
3833766 109.4.1.163 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N 0.59 51.0 3.26e-01 94.9% 44.9%
3575934 109.4.1.891 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_HEATR1 0.59 50.0 3.56e-01 98.7% 62.2%
5044033 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.59 51.0 3.54e-01 100.0% 88.1%
5083098 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 53.0 4.88e-01 100.0% 83.0%
4932209 3843.1.1.6 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.57 45.0 4.54e-01 100.0% 83.7%
3890076 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.56 50.0 3.64e-01 100.0% 49.3%
3794988 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.56 50.0 4.29e-01 100.0% 72.8%
4941754 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.55 49.0 3.64e-01 100.0% 39.5%
3775305 4320.1.1.1 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.55 46.0 3.86e-01 96.2% 64.1%
3774120 4320.1.1.1 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.55 46.0 3.38e-01 96.2% 43.0%
3813322 109.4.1.927 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN 0.54 46.0 3.45e-01 98.7% 63.7%
3847928 4320.1.1.0 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like 0.54 46.0 2.83e-01 98.7% 18.2%
4975796 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.50 35.0 3.36e-01 74.7% 66.3%