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LC667451.1__BDD79889.1__X__00370
Bact-VirLC667451.1__BDD79889.1__X__00370
Identity
- Accession:
- LC667451 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 622-697
Domain cluster:
representative
D2
medium
residues 185-207_423-621
Domain cluster:
rep: LC779065.1__BES79950.1__X__00177__D663-844
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pmzK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.55 | 23.0 | 3.41e-01 | 83.3% | 95.1% |
| 3k53A02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 24.0 | 3.60e-01 | 82.0% | 100.0% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 24.0 | 3.35e-01 | 88.7% | 90.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4148017 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.72 | 63.0 | 6.38e-01 | 90.1% | 94.1% |
| 3612915 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 20.0 | 2.91e-01 | 70.7% | 61.0% |
| 3484908 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 20.0 | 2.88e-01 | 71.2% | 68.6% |
| 3900611 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 12.0 | 2.32e-01 | 83.3% | 61.7% |
| 3185833 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.51 | 23.0 | 2.73e-01 | 78.8% | 58.0% |
D3
medium
residues 208-326_370-422
Domain cluster:
rep: MK308677.1__QAX97080.1__X__00136__D628-665_685-770
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.63 | 51.0 | 5.07e-01 | 83.1% | 100.0% |
| 3fmcA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.61 | 28.0 | 4.12e-01 | 80.2% | 100.0% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.60 | 39.0 | 4.56e-01 | 84.3% | 89.7% |
| 2a6hC06 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.59 | 44.0 | 4.92e-01 | 83.7% | 98.5% |
| 3gp9A00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.58 | 29.0 | 3.28e-01 | 83.7% | 61.7% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 22.0 | 2.82e-01 | 84.9% | 63.8% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 27.0 | 2.99e-01 | 80.8% | 58.5% |
| 2yubA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 30.0 | 3.70e-01 | 85.5% | 88.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4120984 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.69 | 45.0 | 5.45e-01 | 84.3% | 98.3% |
| 4921634 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.66 | 42.0 | 5.09e-01 | 82.6% | 96.4% |
| 4255464 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.64 | 52.0 | 4.57e-01 | 84.9% | 100.0% |
| 4654615 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.63 | 51.0 | 4.58e-01 | 83.7% | 99.1% |
| 4175999 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.63 | 40.0 | 4.97e-01 | 82.0% | 100.0% |
| 4366177 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.62 | 51.0 | 4.55e-01 | 84.3% | 99.6% |
| 4886404 | 4042.1.1.1 ↗ | a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 | 0.62 | 49.0 | 4.50e-01 | 82.0% | 100.0% |
| 4657312 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.61 | 39.0 | 4.81e-01 | 83.7% | 100.0% |
| 4030042 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.59 | 44.0 | 4.93e-01 | 84.9% | 97.7% |
| 4682340 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.59 | 41.0 | 4.81e-01 | 84.3% | 98.4% |
| 4323756 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.59 | 45.0 | 5.01e-01 | 83.1% | 100.0% |
| 4442753 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.57 | 32.0 | 4.23e-01 | 80.2% | 100.0% |
| 3404702 | 304.16.1.0 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like | 0.57 | 24.0 | 3.29e-01 | 84.3% | 75.3% |
| 3491434 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.56 | 41.0 | 4.67e-01 | 83.1% | 100.0% |
| 4069281 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.55 | 44.0 | 4.62e-01 | 84.3% | 98.8% |