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LC680885.1__BDE75585.1__X__00047

Bact-Vir

LC680885.1__BDE75585.1__X__00047

Identity

Accession:
LC680885 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-106
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k18A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.59 48.0 4.18e-01 86.8% 61.2%
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 49.0 4.40e-01 100.0% 65.4%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 30.0 3.34e-01 100.0% 62.5%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 44.0 4.06e-01 80.2% 82.8%
1n1fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 40.0 3.39e-01 72.5% 75.8%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 51.0 4.53e-01 100.0% 84.7%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.57 39.0 3.23e-01 70.3% 87.2%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.89e-01 80.2% 83.5%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.56 40.0 3.39e-01 73.6% 82.5%
1rcwB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.56 46.0 3.59e-01 93.4% 77.1%
2of3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 49.0 3.57e-01 100.0% 51.1%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.56 39.0 3.29e-01 72.5% 90.9%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.46e-01 86.8% 92.9%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.66e-01 87.9% 77.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 39.0 3.79e-01 78.0% 84.5%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 45.0 4.28e-01 100.0% 91.3%
3cuxA02 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.53 41.0 3.82e-01 86.8% 97.5%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 40.0 3.51e-01 84.6% 77.2%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.52 36.0 3.44e-01 71.4% 65.1%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 4.30e-01 98.9% 90.0%
1zoyA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.51 39.0 3.69e-01 84.6% 66.7%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 42.0 3.52e-01 97.8% 83.7%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 40.0 3.45e-01 87.9% 73.0%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 43.0 4.15e-01 100.0% 85.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489555 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 55.0 3.63e-01 100.0% 31.7%
3793422 109.4.1.442 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N 0.61 52.0 4.88e-01 96.7% 87.8%
3269269 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.60 52.0 3.98e-01 100.0% 45.1%
3462836 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 50.0 4.39e-01 94.5% 82.1%
3608568 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 3.60e-01 100.0% 29.5%
3994257 4163.1.2.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like 0.59 49.0 4.72e-01 93.4% 79.0%
3389801 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.58 50.0 3.35e-01 100.0% 39.8%
3528863 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.58 44.0 4.12e-01 82.4% 71.3%
3586442 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.58 44.0 4.16e-01 82.4% 74.5%
5060201 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.57 48.0 4.37e-01 93.4% 82.4%
3912101 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.57 44.0 4.30e-01 84.6% 84.0%
5081088 101.1.2.932 alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.57 35.0 3.63e-01 81.3% 66.3%
3734058 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.56 43.0 4.18e-01 84.6% 83.8%
3186004 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.55 42.0 4.10e-01 82.4% 83.0%
3887898 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 48.0 3.88e-01 100.0% 71.4%
4997684 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 40.0 2.84e-01 79.1% 50.5%
3176412 2005.2.1.0 a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF 0.54 46.0 3.36e-01 98.9% 45.9%
3458081 109.4.1.543 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › efThoc1 0.54 46.0 3.75e-01 100.0% 64.1%
3932690 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.54 41.0 4.17e-01 83.5% 83.3%
3610160 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.05e-01 100.0% 21.6%
3770274 603.1.1.198 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF4716 0.54 41.0 4.07e-01 83.5% 95.8%
3453715 603.1.1.118 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.54 40.0 4.04e-01 80.2% 90.0%
3585151 109.4.1.913 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD 0.54 46.0 3.32e-01 100.0% 30.7%
3969123 109.51.1.1 alpha superhelices › Repetitive alpha hairpins › TssA helical domains › TssA helical domains › ImpA_N 0.53 46.0 3.49e-01 98.9% 77.9%
3943967 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.53 41.0 3.24e-01 82.4% 80.0%
5032064 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 39.0 4.22e-01 79.1% 91.1%
3271959 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 39.0 3.92e-01 80.2% 81.1%
4027582 603.1.1.120 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.52 45.0 4.20e-01 100.0% 95.0%
3401673 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.52 44.0 4.33e-01 91.2% 96.8%
D2 high residues 117-229
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 40.0 5.10e-01 86.7% 100.0%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.67 56.0 5.10e-01 93.8% 67.8%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 45.0 4.98e-01 78.8% 87.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 59.0 4.16e-01 100.0% 34.2%
3woyA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 58.0 4.56e-01 98.2% 64.6%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 58.0 4.21e-01 100.0% 47.7%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 58.0 5.45e-01 99.1% 87.6%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 48.0 5.27e-01 92.0% 100.0%
3tt9A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 55.0 4.44e-01 100.0% 53.2%
6u3wB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 48.0 3.58e-01 92.0% 33.0%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 46.0 3.94e-01 85.0% 81.0%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.58 47.0 3.92e-01 86.7% 68.7%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 44.0 4.12e-01 95.6% 64.3%
2gw1A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 3.43e-01 94.7% 29.7%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.56 46.0 4.20e-01 90.3% 95.5%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 46.0 3.99e-01 87.6% 63.6%
2f2bA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.55 46.0 3.70e-01 94.7% 90.6%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.54 40.0 4.21e-01 76.1% 97.0%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.54 31.0 3.27e-01 82.3% 60.0%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.54 33.0 3.24e-01 79.6% 54.8%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.53 42.0 4.49e-01 87.6% 96.9%
2juaA00 1.20.1480.30 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein 0.52 38.0 4.02e-01 76.1% 92.2%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 33.0 3.57e-01 81.4% 76.6%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.52 39.0 4.21e-01 85.8% 92.9%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 41.0 3.97e-01 89.4% 91.0%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 41.0 4.11e-01 88.5% 90.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3176648 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.71 50.0 4.12e-01 73.5% 87.0%
3330532 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.70 63.0 5.25e-01 100.0% 89.7%
4014268 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 4.81e-01 100.0% 72.3%
3403365 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 62.0 4.56e-01 100.0% 41.0%
3582684 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 60.0 4.88e-01 100.0% 58.7%
3246418 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.68 59.0 5.73e-01 95.6% 92.0%
3737183 109.4.1.134 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD 0.66 59.0 4.14e-01 100.0% 36.6%
3261843 109.4.1.1349 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29011 0.66 59.0 3.71e-01 100.0% 19.8%
3320963 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 54.0 4.80e-01 100.0% 61.8%
3169559 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 57.0 3.67e-01 100.0% 21.2%
4976398 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.65 45.0 4.67e-01 70.8% 93.2%
3666055 109.4.1.1742 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_CPL3 0.64 52.0 5.15e-01 86.7% 96.7%
3611965 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 58.0 4.21e-01 100.0% 47.6%
3345797 109.4.1.1257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.64 53.0 4.84e-01 100.0% 67.7%
5050956 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 40.0 2.83e-01 83.2% 21.9%
3190073 109.4.1.930 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_ECM29_C 0.61 53.0 4.04e-01 100.0% 76.9%
3183000 109.4.1.3568 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16, TPR_22 0.59 53.0 3.98e-01 100.0% 40.4%
3192189 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 53.0 3.66e-01 100.0% 45.4%
4987589 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 3.57e-01 98.2% 30.1%
3299888 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.58 43.0 4.44e-01 100.0% 80.9%
4482156 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.58 34.0 3.08e-01 75.2% 41.9%
3461675 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 46.0 4.53e-01 97.3% 81.7%
3631303 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 4.15e-01 97.3% 63.0%
3681932 185.1.1.2 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2 0.57 41.0 4.22e-01 76.1% 100.0%
3376126 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.57 49.0 4.96e-01 97.3% 96.5%
4443552 109.4.1.912 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KDM8_N 0.56 46.0 4.31e-01 90.3% 77.2%
3801787 604.5.1.39 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 0.54 44.0 4.13e-01 85.0% 91.1%
3576774 109.4.1.890 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.54 46.0 4.10e-01 100.0% 65.3%
4980072 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 4.01e-01 95.6% 77.8%
3595737 109.4.1.218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.52 45.0 4.19e-01 100.0% 80.0%
3592624 627.1.1.0 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain 0.51 39.0 3.34e-01 82.3% 82.6%
4445151 2004.1.1.226 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.51 45.0 3.34e-01 100.0% 81.3%