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LC680885.1__BDE75681.1__X__00143
Bact-VirLC680885.1__BDE75681.1__X__00143
Identity
- Accession:
- LC680885 ↗
- Kingdom:
- phage
Quality
68.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 376-440
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bolA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.83 | 69.0 | 6.42e-01 | 96.9% | 72.5% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.82 | 75.0 | 6.79e-01 | 98.5% | 78.8% |
| 1ck7A01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.82 | 64.0 | 4.27e-01 | 92.3% | 23.0% |
| 1eakA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.82 | 64.0 | 6.56e-01 | 93.8% | 87.3% |
| 7aj9A01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.81 | 68.0 | 6.77e-01 | 95.4% | 89.6% |
| 3bkhA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.80 | 73.0 | 6.54e-01 | 98.5% | 76.7% |
| 1lbuA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.79 | 72.0 | 6.57e-01 | 98.5% | 84.5% |
| 4g54A02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.79 | 71.0 | 6.87e-01 | 98.5% | 91.7% |
| 6vbkB02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 55.0 | 5.31e-01 | 100.0% | 98.7% |
| 2jigA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.64 | 44.0 | 3.09e-01 | 72.3% | 93.2% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 44.0 | 3.97e-01 | 73.8% | 82.6% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 49.0 | 4.54e-01 | 92.3% | 90.5% |
| 3evyA00 | 1.20.58.910 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 3.90e-01 | 75.4% | 92.8% |
| 3f6tA02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.54 | 46.0 | 3.65e-01 | 100.0% | 57.1% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.54 | 38.0 | 3.33e-01 | 75.4% | 71.6% |
| 2gwlA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.54 | 37.0 | 2.76e-01 | 75.4% | 26.5% |
| 2cq8A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 44.0 | 4.15e-01 | 93.8% | 96.3% |
| 1dk5A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.52 | 40.0 | 3.99e-01 | 84.6% | 100.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4055540 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.90 | 80.0 | 7.81e-01 | 100.0% | 88.4% |
| 3263339 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.88 | 77.0 | 7.31e-01 | 96.9% | 81.3% |
| 4117418 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.87 | 69.0 | 7.22e-01 | 92.3% | 91.7% |
| 3299326 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.86 | 73.0 | 7.39e-01 | 95.4% | 90.8% |
| 4312892 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 70.0 | 7.32e-01 | 100.0% | 96.7% |
| 1877329 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 72.0 | 6.81e-01 | 98.5% | 78.9% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.84 | 70.0 | 4.83e-01 | 100.0% | 29.0% |
| 3060287 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.84 | 73.0 | 6.94e-01 | 98.5% | 81.3% |
| 1086899 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 69.0 | 6.48e-01 | 96.9% | 74.4% |
| 5019285 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 77.0 | 6.64e-01 | 100.0% | 82.1% |
| 3291401 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 76.0 | 6.89e-01 | 100.0% | 91.8% |
| 1165079 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 75.0 | 6.50e-01 | 98.5% | 69.8% |
| 3302194 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 75.0 | 6.51e-01 | 98.5% | 78.9% |
| 3957237 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.82 | 74.0 | 7.05e-01 | 96.9% | 92.0% |
| 3955223 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 74.0 | 6.86e-01 | 96.9% | 86.3% |
| 3539881 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 72.0 | 6.85e-01 | 100.0% | 82.7% |
| 3959835 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.81 | 74.0 | 7.26e-01 | 98.5% | 98.6% |
| 3930763 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 75.0 | 7.06e-01 | 98.5% | 86.7% |
| 3275963 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 74.0 | 6.59e-01 | 100.0% | 84.4% |
| 3299934 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 74.0 | 6.23e-01 | 100.0% | 75.2% |
| 4321110 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.80 | 66.0 | 6.30e-01 | 95.4% | 77.3% |
| 3356981 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 72.0 | 6.71e-01 | 98.5% | 86.3% |
| 4473649 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 72.0 | 6.51e-01 | 98.5% | 90.6% |
| 3319740 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 71.0 | 6.44e-01 | 98.5% | 82.4% |
| 224034 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 71.0 | 6.57e-01 | 98.5% | 81.5% |
| 4600634 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 66.0 | 6.86e-01 | 90.8% | 98.3% |
| 3772398 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 71.0 | 6.56e-01 | 98.5% | 78.8% |
| 3332533 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 72.0 | 6.13e-01 | 100.0% | 86.0% |
| 3994858 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 68.0 | 6.31e-01 | 98.5% | 76.2% |
| 4857662 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 65.0 | 6.27e-01 | 95.4% | 81.7% |
| 4010440 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 69.0 | 6.54e-01 | 98.5% | 92.0% |
| 3933825 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 67.0 | 6.34e-01 | 93.8% | 84.0% |
| 3772718 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 68.0 | 6.16e-01 | 95.4% | 74.1% |
| 3222017 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.77 | 70.0 | 6.22e-01 | 100.0% | 75.6% |
| 2819638 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 68.0 | 5.63e-01 | 100.0% | 62.1% |
| 3764906 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 68.0 | 6.33e-01 | 100.0% | 80.0% |
| 3221065 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 68.0 | 6.51e-01 | 98.5% | 92.0% |
| 3537259 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 69.0 | 6.38e-01 | 100.0% | 81.2% |
| 3893524 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 65.0 | 6.31e-01 | 92.3% | 85.7% |
| 3765966 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.74 | 66.0 | 6.06e-01 | 100.0% | 75.3% |
| 3247155 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.74 | 59.0 | 5.99e-01 | 98.5% | 89.2% |
| 4160453 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.74 | 63.0 | 6.14e-01 | 93.8% | 84.3% |
| 3768971 | 192.29.1.11 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA | 0.63 | 44.0 | 3.70e-01 | 72.3% | 70.0% |
| 3700618 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 42.0 | 3.62e-01 | 72.3% | 57.0% |
| 4026988 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.55 | 48.0 | 3.22e-01 | 100.0% | 41.2% |
D2
medium
residues 1-89_113-194
D3
medium
residues 218-359
Domain cluster:
rep: IMGVR_UViG_3300037528_000179-3300037528-Ga0334897_003245_6310_7515__D6-137
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01471.24 best | PG_binding_1 | 46.1 | 6.10e-12 | 39.4% | 98.2% |
| PF01471.24 | PG_binding_1 | 45.7 | 8.40e-12 | 34.5% | 79.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ck7A01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.55 | 40.0 | 3.37e-01 | 76.1% | 76.2% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 29.0 | 3.55e-01 | 88.7% | 87.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3060287 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.81 | 36.0 | 4.94e-01 | 93.7% | 81.3% |
| 1877329 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 41.0 | 5.57e-01 | 71.8% | 94.7% |
| 3274761 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.71 | 47.0 | 4.48e-01 | 97.2% | 58.2% |
| 3788528 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.65 | 42.0 | 4.07e-01 | 96.5% | 59.4% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 46.0 | 4.05e-01 | 90.1% | 71.5% |