←Back to structures

LC680885.1__BDE75711.1__X__00173

Bact-Vir

LC680885.1__BDE75711.1__X__00173

Identity

Accession:
LC680885 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_S6

TaxID: 2913378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-84
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3na8A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 2.99e-01 98.5% 59.1%
6arhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 2.90e-01 98.5% 60.0%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 44.0 3.64e-01 100.0% 90.0%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.50 43.0 3.17e-01 100.0% 72.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3725344 4177.2.1.7 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › DUF7603 0.58 43.0 2.95e-01 80.9% 76.9%
4560874 605.1.1.154 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MARCHF6_C 0.54 40.0 3.18e-01 82.4% 67.5%