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LC680885.1__BDE75719.1__X__00181

Bact-Vir

LC680885.1__BDE75719.1__X__00181

Identity

Accession:
LC680885 ↗
Kingdom:
phage

Quality

63.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_S6

TaxID: 2913378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-197
PDB
Domain cluster: rep: KT895374.1__ALN97717.1__Bp8pS_038__00038__D86-162
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.64 31.0 3.68e-01 92.1% 66.7%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.61 25.0 3.48e-01 77.5% 80.0%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 42.0 4.41e-01 71.9% 91.0%
1d0dA00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.58 27.0 3.22e-01 78.7% 61.7%
2vh2B01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 38.0 4.11e-01 75.3% 83.3%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 40.0 4.12e-01 71.9% 84.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 31.0 3.39e-01 71.9% 69.1%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.53 45.0 3.91e-01 95.5% 68.5%
1zysA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 32.0 3.23e-01 75.3% 56.8%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 3.02e-01 80.9% 90.4%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.97e-01 97.8% 88.6%
4nrvA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 38.0 3.37e-01 83.1% 83.2%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 36.0 3.24e-01 73.0% 78.3%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.90e-01 97.8% 95.3%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.50 22.0 2.64e-01 77.5% 59.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3831895 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 47.0 3.30e-01 70.8% 34.9%
3303720 3336.1.1.1 ↗ alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.60 41.0 2.70e-01 70.8% 87.7%
3811668 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 24.0 3.55e-01 92.1% 82.5%
3209636 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.58 42.0 4.24e-01 78.7% 93.3%
4013126 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.58 31.0 3.18e-01 85.4% 52.2%
5066657 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.57 39.0 3.43e-01 70.8% 95.0%
5054060 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 35.0 3.63e-01 75.3% 64.7%
4030325 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 39.0 3.65e-01 73.0% 96.5%
3254281 3241.1.1.1 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.56 39.0 2.92e-01 74.2% 91.0%
4927828 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 40.0 3.86e-01 76.4% 97.0%
4957877 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 38.0 4.19e-01 73.0% 92.9%
4399128 7581.1.1.30 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.54 39.0 2.61e-01 75.3% 23.2%
3275934 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 19.0 2.93e-01 92.1% 73.3%
3621043 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.51 30.0 2.91e-01 76.4% 48.5%
5008021 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.51 44.0 4.04e-01 97.8% 88.6%
3211040 910.1.1.1 ↗ few secondary structure elements › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › DM 0.51 30.0 3.19e-01 70.8% 66.2%
3329735 327.11.2.37 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st 0.51 31.0 3.37e-01 74.2% 74.3%
3200582 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.51 44.0 3.96e-01 97.8% 84.8%