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LC680885.1__BDE75759.1__X__00221

Bact-Vir

LC680885.1__BDE75759.1__X__00221

Identity

Accession:
LC680885 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_S6

TaxID: 2913378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 247-427
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00623.26 best RNA_pol_Rpb1_2 25.5 2.00e-05 79.6% 89.8%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.91 50.0 6.85e-01 82.9% 99.0%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.90 69.0 7.71e-01 82.3% 97.9%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.86 41.0 5.71e-01 76.2% 88.5%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.82 40.0 5.72e-01 76.8% 94.6%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.79 35.0 5.44e-01 73.5% 100.0%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.79 57.0 6.42e-01 88.4% 93.7%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.77 42.0 5.60e-01 75.7% 96.1%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.70 40.0 5.18e-01 76.8% 95.4%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.68 36.0 4.96e-01 73.5% 100.0%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.68 39.0 5.09e-01 74.6% 99.0%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 21.0 3.09e-01 72.9% 68.4%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 21.0 2.97e-01 72.9% 62.1%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 20.0 3.50e-01 72.4% 100.0%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 24.0 3.66e-01 73.5% 98.5%
1wc2A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.54 43.0 4.36e-01 82.3% 85.6%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.52 25.0 3.52e-01 80.1% 100.0%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.50 20.0 3.10e-01 91.7% 100.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 89.0 8.66e-01 95.6% 89.2%
4886549 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.91 73.0 7.93e-01 88.4% 96.1%
4887355 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 49.0 5.98e-01 81.8% 79.0%
2968637 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.90 81.0 8.46e-01 92.3% 100.0%
4026183 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.90 72.0 7.88e-01 88.4% 98.0%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.90 55.0 6.95e-01 90.1% 96.5%
1746098 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.90 73.0 7.64e-01 88.4% 90.5%
3684523 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.89 55.0 6.71e-01 88.4% 90.4%
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.89 55.0 6.83e-01 89.0% 94.2%
3596090 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.88 55.0 6.83e-01 88.4% 95.0%
4129914 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.88 76.0 7.10e-01 95.6% 74.9%
5052052 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.85 41.0 5.76e-01 76.8% 90.5%
5041263 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 40.0 5.99e-01 74.6% 100.0%
4890084 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.84 55.0 6.68e-01 93.9% 97.5%
4979696 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 40.0 5.95e-01 76.2% 100.0%
4445483 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.84 40.0 5.93e-01 74.6% 100.0%
4986590 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 40.0 5.92e-01 76.2% 100.0%
4205030 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 40.0 5.88e-01 74.6% 100.0%
5028227 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 39.0 5.86e-01 72.9% 100.0%
4931749 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 40.0 5.83e-01 74.6% 100.0%
4200720 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 39.0 5.82e-01 74.6% 100.0%
4346976 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 39.0 5.75e-01 75.1% 98.8%
4946804 1.1.2.44 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Glycos_trans_3N 0.82 39.0 5.82e-01 76.2% 100.0%
4938514 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 39.0 5.81e-01 75.7% 100.0%
5060583 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.82 39.0 5.73e-01 73.5% 98.8%
4941448 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 39.0 5.80e-01 74.6% 100.0%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.81 44.0 3.57e-01 74.6% 31.5%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 41.0 5.79e-01 77.3% 98.9%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 39.0 5.72e-01 75.7% 100.0%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.80 39.0 5.58e-01 76.2% 95.6%
4263053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 39.0 5.67e-01 74.0% 100.0%
3557903 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.78 41.0 5.65e-01 78.5% 97.9%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 40.0 5.44e-01 76.8% 92.0%
3186315 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 42.0 5.69e-01 74.6% 97.0%
3360997 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.77 55.0 6.17e-01 89.5% 91.0%
4890564 101.1.2.869 ↗ alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.77 36.0 5.22e-01 72.4% 98.8%
4203264 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.76 41.0 5.62e-01 74.0% 100.0%
3412967 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.76 39.0 5.47e-01 74.6% 100.0%
3255733 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 42.0 5.68e-01 74.6% 100.0%
4030729 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.73 42.0 5.48e-01 76.8% 97.1%
4048983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 42.0 5.36e-01 77.3% 98.1%
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.71 58.0 5.62e-01 84.0% 89.5%
4871383 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.71 38.0 5.17e-01 75.7% 100.0%
5081033 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 65.0 6.25e-01 95.6% 94.0%
3836120 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.71 60.0 5.89e-01 88.4% 98.5%
4948679 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.71 67.0 5.34e-01 98.9% 92.0%
5058903 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.70 64.0 6.30e-01 94.5% 98.4%
4015760 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 59.0 5.80e-01 87.3% 94.9%
4943460 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.70 61.0 6.06e-01 89.5% 94.6%
3698542 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.70 61.0 5.81e-01 90.1% 93.2%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.70 60.0 6.11e-01 90.1% 93.3%
4299713 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 38.0 4.98e-01 73.5% 95.2%
4419943 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.67 36.0 4.87e-01 74.6% 96.0%
3735360 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 40.0 5.09e-01 77.9% 97.3%
3976753 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.66 41.0 4.47e-01 79.6% 74.0%
3627366 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 36.0 4.78e-01 75.7% 98.0%
4013955 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 40.0 4.84e-01 77.3% 97.6%
164888 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.60 21.0 2.97e-01 72.9% 62.1%
4370157 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.60 39.0 4.44e-01 85.1% 83.9%
5056546 3349.1.1.3 ↗ a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat 0.60 48.0 3.44e-01 83.4% 36.8%
3546996 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.58 21.0 3.28e-01 76.2% 81.4%
3930859 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.57 20.0 3.07e-01 71.8% 73.3%
4954178 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.57 54.0 3.93e-01 100.0% 50.8%
4961166 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.57 54.0 4.83e-01 100.0% 82.0%
3520902 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 21.0 3.28e-01 70.2% 87.7%
3471666 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.56 25.0 3.73e-01 82.3% 100.0%
3684407 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.56 43.0 4.52e-01 79.0% 86.7%
5030460 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.56 49.0 3.45e-01 90.6% 36.1%
4498374 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.55 52.0 4.63e-01 100.0% 74.8%
3688059 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 44.0 4.62e-01 89.5% 91.5%
3497163 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.54 24.0 3.43e-01 92.8% 88.7%
3924147 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 24.0 3.21e-01 95.6% 83.3%
3175987 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.50 44.0 4.19e-01 92.3% 96.7%
D2 medium residues 13-63_145-158
PDB
Domain cluster: rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00084__D6-65_144-157
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2886103 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.89 83.0 5.43e-01 100.0% 61.5%
4261674 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.87 81.0 5.04e-01 100.0% 63.9%
4469646 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.87 80.0 4.99e-01 100.0% 66.2%
4196271 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.86 80.0 4.82e-01 100.0% 69.1%
4023943 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.86 80.0 4.97e-01 100.0% 66.0%
4344997 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.86 80.0 4.86e-01 100.0% 62.0%
4036245 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.86 79.0 4.75e-01 100.0% 72.3%
4647819 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.86 79.0 4.80e-01 100.0% 69.9%
4629506 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.86 79.0 4.94e-01 100.0% 63.8%
4228406 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.85 79.0 5.00e-01 100.0% 60.4%
3550786 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.84 78.0 4.62e-01 100.0% 69.0%
3293738 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.83 76.0 4.63e-01 100.0% 68.8%
4380798 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.83 76.0 4.73e-01 100.0% 63.7%
3737421 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.83 76.0 4.58e-01 100.0% 67.6%
3270404 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.83 76.0 4.55e-01 100.0% 73.1%
3928969 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.82 76.0 4.50e-01 100.0% 67.9%
3393665 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.82 75.0 4.61e-01 100.0% 66.3%
3205937 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.82 75.0 4.41e-01 100.0% 72.1%
3722540 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.81 74.0 4.46e-01 100.0% 71.9%
3610049 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.81 74.0 4.54e-01 100.0% 64.9%
D3 medium residues 64-144
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xbfA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.61 36.0 3.40e-01 88.9% 47.5%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.50 33.0 2.85e-01 84.0% 41.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2886103 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.75 68.0 4.73e-01 100.0% 33.1%
5076912 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.55 36.0 3.74e-01 100.0% 73.3%
4015726 141.1.1.0 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases 0.55 46.0 3.13e-01 98.8% 92.8%
3542805 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 37.0 3.59e-01 76.5% 75.6%
D4 medium residues 159-242
PDB
Domain cluster: rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00084__D158-225
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 63.0 4.36e-01 100.0% 26.6%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.86 65.0 5.43e-01 78.6% 50.0%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 62.0 7.17e-01 85.7% 100.0%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.84 66.0 7.14e-01 81.0% 98.6%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.84 59.0 6.88e-01 91.7% 98.4%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.84 52.0 5.19e-01 71.4% 60.9%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 60.0 6.26e-01 96.4% 81.6%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.84 59.0 6.55e-01 92.9% 91.0%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.82 63.0 6.13e-01 100.0% 74.4%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 66.0 5.61e-01 84.5% 56.2%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.82 64.0 6.41e-01 100.0% 81.2%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 56.0 6.04e-01 98.8% 83.1%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.81 55.0 5.19e-01 83.3% 59.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.80 64.0 6.28e-01 83.3% 81.1%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 51.0 3.76e-01 77.4% 26.8%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.79 61.0 4.96e-01 79.8% 64.1%
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.79 61.0 6.10e-01 100.0% 79.1%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 50.0 6.14e-01 79.8% 100.0%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.79 65.0 4.95e-01 98.8% 41.1%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.79 59.0 4.76e-01 78.6% 47.8%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.79 55.0 5.93e-01 83.3% 85.7%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 56.0 6.13e-01 90.5% 91.2%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 59.0 5.58e-01 84.5% 67.3%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.77 56.0 6.00e-01 75.0% 88.7%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 61.0 6.34e-01 90.5% 89.6%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 59.0 6.26e-01 91.7% 90.7%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.76 52.0 5.68e-01 73.8% 88.1%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.76 59.0 4.61e-01 94.0% 41.1%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 56.0 6.00e-01 95.2% 90.3%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 57.0 4.45e-01 79.8% 40.2%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.75 59.0 5.24e-01 82.1% 61.1%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.72 49.0 4.01e-01 72.6% 38.5%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.72 48.0 5.44e-01 83.3% 98.3%
3e6sA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 59.0 4.71e-01 89.3% 47.8%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.70 50.0 4.43e-01 77.4% 51.7%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 45.0 4.72e-01 70.2% 73.0%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 4.85e-01 96.4% 65.3%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 60.0 5.08e-01 92.9% 66.2%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.68 56.0 4.67e-01 94.0% 53.7%
2q83A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.68 50.0 3.66e-01 81.0% 28.3%
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 50.0 5.31e-01 91.7% 93.0%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 43.0 5.09e-01 72.6% 100.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.64 55.0 5.38e-01 94.0% 83.5%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.60 47.0 4.74e-01 82.1% 98.8%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 44.0 3.09e-01 81.0% 33.2%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 49.0 4.14e-01 91.7% 82.6%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 43.0 2.85e-01 83.3% 25.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1506772 3812.1.1.1 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E 0.94 55.0 6.04e-01 75.0% 71.4%
3448294 3826.1.1.33 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › eIF-4B 0.91 62.0 6.26e-01 92.9% 69.4%
3240235 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.90 64.0 5.65e-01 78.6% 53.9%
3901145 109.4.1.1350 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.89 69.0 3.81e-01 84.5% 6.6%
4024281 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 56.0 7.02e-01 76.2% 100.0%
3310476 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.87 68.0 5.69e-01 96.4% 52.3%
3327870 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.86 63.0 6.56e-01 79.8% 81.0%
3712319 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.86 69.0 5.20e-01 98.8% 38.9%
4261674 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.85 58.0 3.83e-01 70.2% 19.2%
4026684 192.20.1.7 ↗ alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 0.84 69.0 6.35e-01 98.8% 68.6%
3390898 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.84 67.0 6.26e-01 100.0% 70.0%
3240117 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.84 65.0 6.36e-01 98.8% 75.6%
3579247 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.83 64.0 5.56e-01 83.3% 55.8%
3234964 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.82 65.0 5.84e-01 98.8% 63.6%
4214119 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.82 65.0 4.42e-01 84.5% 77.5%
3609224 3602.1.1.3 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Enkurin 0.81 57.0 5.84e-01 83.3% 75.0%
3229095 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.80 64.0 6.05e-01 84.5% 71.0%
4024277 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 66.0 6.99e-01 92.9% 96.0%
3672521 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.80 66.0 5.25e-01 100.0% 47.1%
3595877 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.80 62.0 5.41e-01 81.0% 56.7%
3720488 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.80 67.0 5.63e-01 88.1% 77.7%
3973453 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.79 65.0 6.74e-01 97.6% 91.3%
5026881 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 65.0 6.85e-01 92.9% 96.0%
3619435 192.8.1.36 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.77 67.0 6.38e-01 90.5% 100.0%
3737517 3560.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.77 57.0 4.29e-01 94.0% 34.2%
3469701 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.77 68.0 4.79e-01 100.0% 34.2%
3598577 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.77 44.0 4.59e-01 83.3% 60.0%
3725482 601.16.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.77 57.0 5.00e-01 77.4% 60.8%
4181721 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 54.0 4.72e-01 91.7% 49.6%
4062183 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 56.0 5.91e-01 83.3% 86.7%
3559003 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 66.0 6.17e-01 98.8% 77.0%
5002349 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 54.0 6.00e-01 91.7% 96.9%
4129936 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 55.0 5.28e-01 76.2% 76.8%
4999868 604.1.1.264 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Oxidored_q2 0.75 50.0 4.89e-01 76.2% 63.3%
3290070 5011.1.1.0 ↗ extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa 0.74 48.0 5.60e-01 81.0% 100.0%
3597816 5069.1.1.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.73 64.0 4.25e-01 92.9% 30.7%
3626992 632.8.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.73 64.0 5.94e-01 94.0% 91.4%
3927737 632.8.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.72 62.0 5.91e-01 90.5% 97.9%
3940087 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 53.0 5.45e-01 83.3% 82.5%
3587564 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.71 50.0 5.11e-01 82.1% 77.2%
3992452 150.5.1.74 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › CUX1_N 0.71 56.0 5.72e-01 98.8% 88.7%
3453933 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.71 64.0 5.79e-01 96.4% 90.9%
5050139 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 54.0 5.62e-01 97.6% 90.7%
3738678 3343.1.1.0 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) 0.71 59.0 5.08e-01 88.1% 66.4%
3470995 109.4.1.470 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.70 46.0 2.91e-01 75.0% 13.3%
3491182 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.70 46.0 3.80e-01 75.0% 37.6%
3586442 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.69 53.0 4.86e-01 85.7% 62.7%
4993195 632.6.1.15 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 0.68 48.0 4.62e-01 72.6% 66.3%
4946791 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 48.0 5.04e-01 92.9% 84.0%
4158967 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.68 60.0 4.60e-01 97.6% 75.3%
3614068 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.68 59.0 6.03e-01 100.0% 98.8%
4219218 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.68 63.0 5.70e-01 100.0% 92.7%
3923922 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 49.0 5.16e-01 84.5% 88.0%
4620002 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.67 59.0 5.95e-01 95.2% 94.1%
4470423 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.65 56.0 5.07e-01 96.4% 91.3%
5083304 601.33.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.64 51.0 4.42e-01 88.1% 78.5%
3728087 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.64 53.0 4.78e-01 90.5% 90.4%
4171351 1.1.5.44 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.63 57.0 4.46e-01 95.2% 61.2%
4100663 7575.1.1.11 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.57 48.0 3.20e-01 92.9% 24.8%
3699525 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 45.0 4.03e-01 92.9% 95.8%