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LC680885.1__BDE75784.1__X__00246
Bact-VirLC680885.1__BDE75784.1__X__00246
Identity
- Accession:
- LC680885 ↗
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-141
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2if1A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.69 | 46.0 | 4.63e-01 | 71.0% | 66.7% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.66 | 41.0 | 4.30e-01 | 75.8% | 68.4% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 47.0 | 5.18e-01 | 77.4% | 92.9% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 45.0 | 4.64e-01 | 80.6% | 74.8% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 46.0 | 5.13e-01 | 76.6% | 92.8% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.65 | 44.0 | 4.36e-01 | 70.2% | 93.3% |
| 6fyqA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 48.0 | 4.26e-01 | 78.2% | 59.1% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.64 | 52.0 | 4.85e-01 | 87.9% | 75.5% |
| 1usmA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.63 | 39.0 | 4.74e-01 | 70.2% | 100.0% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.62 | 43.0 | 4.77e-01 | 80.6% | 91.7% |
| 2qmaA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 44.0 | 4.43e-01 | 75.8% | 74.4% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 38.0 | 4.07e-01 | 71.8% | 71.2% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.59 | 41.0 | 3.92e-01 | 71.0% | 100.0% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 42.0 | 3.55e-01 | 75.0% | 93.7% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.58 | 44.0 | 4.29e-01 | 81.5% | 86.4% |
| 1m32A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 40.0 | 4.22e-01 | 74.2% | 80.2% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 43.0 | 3.90e-01 | 85.5% | 58.1% |
| 4bwpB01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.55 | 44.0 | 3.60e-01 | 87.1% | 80.8% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 43.0 | 4.27e-01 | 83.1% | 86.7% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 43.0 | 4.25e-01 | 83.1% | 87.6% |
| 4hn7A00 | 2.40.50.650 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 33.0 | 3.95e-01 | 74.2% | 94.1% |
| 2eabB01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.51 | 43.0 | 3.51e-01 | 95.2% | 90.7% |
| 2l8oA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 45.0 | 4.30e-01 | 99.2% | 95.1% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 44.0 | 3.82e-01 | 94.4% | 71.3% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3365684 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.70 | 48.0 | 5.32e-01 | 71.0% | 98.0% |
| 5035383 | 305.2.1.3 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › PF27806 | 0.67 | 44.0 | 5.10e-01 | 71.0% | 92.2% |
| 3468140 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 47.0 | 5.35e-01 | 75.0% | 100.0% |
| 4964031 | 7089.1.1.7 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 | 0.66 | 36.0 | 4.69e-01 | 82.3% | 94.3% |
| 3801312 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.66 | 46.0 | 5.35e-01 | 76.6% | 100.0% |
| 3247221 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.64 | 47.0 | 4.72e-01 | 79.0% | 74.4% |
| 3411230 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 43.0 | 4.21e-01 | 71.8% | 62.2% |
| 3216641 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.64 | 46.0 | 4.73e-01 | 78.2% | 76.7% |
| 3500240 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 46.0 | 4.88e-01 | 79.0% | 84.5% |
| 3603717 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 38.0 | 4.69e-01 | 91.1% | 93.8% |
| 5000791 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.63 | 48.0 | 4.87e-01 | 78.2% | 90.8% |
| 4626502 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.63 | 39.0 | 3.90e-01 | 77.4% | 60.0% |
| 3367922 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.62 | 45.0 | 4.96e-01 | 75.8% | 96.8% |
| 4230972 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 42.0 | 4.91e-01 | 72.6% | 100.0% |
| 3587799 | 4354.1.1.1 ↗ | a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF | 0.62 | 51.0 | 4.77e-01 | 87.9% | 76.1% |
| 5028488 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.62 | 39.0 | 4.25e-01 | 75.8% | 75.2% |
| 3237015 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 42.0 | 4.73e-01 | 71.0% | 91.6% |
| 3584527 | 216.1.1.9 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 | 0.61 | 38.0 | 3.94e-01 | 83.9% | 66.1% |
| 3437535 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.61 | 49.0 | 3.52e-01 | 85.5% | 62.9% |
| 4990121 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.61 | 41.0 | 4.45e-01 | 76.6% | 81.9% |
| 4937958 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.60 | 49.0 | 3.57e-01 | 85.5% | 90.2% |
| 3391435 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.60 | 45.0 | 4.07e-01 | 77.4% | 93.3% |
| 4485008 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.60 | 49.0 | 4.24e-01 | 87.9% | 93.8% |
| 3813809 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.60 | 42.0 | 4.60e-01 | 72.6% | 97.0% |
| 4033306 | 2011.1.1.23 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › M20_dimer | 0.60 | 49.0 | 4.22e-01 | 87.9% | 93.8% |
| 4631988 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.59 | 50.0 | 4.29e-01 | 90.3% | 94.4% |
| 4092520 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 43.0 | 4.47e-01 | 82.3% | 82.6% |
| 4028024 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.59 | 42.0 | 4.77e-01 | 87.9% | 97.8% |
| None | — | 0.58 | 40.0 | 4.07e-01 | 81.5% | 72.5% | |
| 4259150 | 295.1.1.46 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI | 0.58 | 39.0 | 3.78e-01 | 87.1% | 61.5% |
| 3988437 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.58 | 48.0 | 4.17e-01 | 90.3% | 94.2% |
| 3521725 | 327.11.2.55 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26774 | 0.57 | 37.0 | 4.27e-01 | 75.0% | 94.1% |
| None | — | 0.57 | 41.0 | 3.94e-01 | 83.9% | 65.0% | |
| 3984327 | 241.1.1.4 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Chaperone_III | 0.57 | 43.0 | 4.49e-01 | 79.8% | 90.4% |
| 3785854 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.57 | 44.0 | 4.61e-01 | 82.3% | 91.7% |
| 176932 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 47.0 | 4.10e-01 | 90.3% | 87.2% |
| 3599877 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.57 | 49.0 | 4.15e-01 | 96.0% | 67.8% |
| 3585692 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.57 | 40.0 | 3.84e-01 | 85.5% | 61.3% |
| 4509301 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.56 | 37.0 | 3.44e-01 | 75.0% | 52.5% |
| 5049183 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 47.0 | 4.80e-01 | 89.5% | 96.6% |
| 5055761 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.55 | 43.0 | 4.15e-01 | 82.3% | 88.6% |
| 3319085 | 4099.1.1.27 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 | 0.54 | 40.0 | 4.39e-01 | 86.3% | 94.0% |
| 5046089 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.54 | 43.0 | 3.47e-01 | 85.5% | 78.6% |
| 3595328 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.54 | 31.0 | 3.34e-01 | 80.6% | 65.7% |
| 5008116 | 304.24.1.39 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 | 0.53 | 39.0 | 4.41e-01 | 82.3% | 100.0% |
| 3711102 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.53 | 32.0 | 3.49e-01 | 83.1% | 72.0% |
| 5008353 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.53 | 41.0 | 4.15e-01 | 80.6% | 87.5% |
| 4030584 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.53 | 42.0 | 3.03e-01 | 86.3% | 77.6% |
| 4965616 | 304.24.1.39 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 | 0.53 | 45.0 | 4.50e-01 | 91.9% | 97.6% |
| 3500713 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.51 | 36.0 | 3.62e-01 | 85.5% | 70.4% |
| 5018160 | 304.5.1.31 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF790 | 0.51 | 39.0 | 4.31e-01 | 85.5% | 100.0% |
| 4992013 | 304.4.1.80 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF790 | 0.51 | 44.0 | 4.21e-01 | 95.2% | 82.9% |
| 3969507 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 39.0 | 3.13e-01 | 83.9% | 89.1% |