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BDI54864.1
Arc-VirLC711077__BDI54864.1__X__00015
Identity
- Accession:
- LC711077 ↗
- Protein ID:
- BDI54864.1 ↗
- Kingdom:
- archaea
Quality
75.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Verdandiviridae›
Dolusvirus›
Lokiarchaeia_virus_VerdaV1
TaxID: 3070170
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-132
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.67 | 46.0 | 5.13e-01 | 98.4% | 91.6% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.62 | 33.0 | 3.92e-01 | 88.0% | 75.6% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 29.0 | 3.55e-01 | 88.0% | 68.9% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.60 | 56.0 | 5.18e-01 | 100.0% | 83.3% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.58 | 37.0 | 3.82e-01 | 100.0% | 68.1% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 32.0 | 3.61e-01 | 88.0% | 70.5% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.57 | 46.0 | 4.75e-01 | 100.0% | 89.9% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 32.0 | 3.38e-01 | 94.4% | 61.5% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.93e-01 | 86.4% | 75.6% |
| 6fexA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 35.0 | 3.92e-01 | 100.0% | 83.8% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.61e-01 | 86.4% | 70.2% |
| 6ue9L02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 32.0 | 3.28e-01 | 96.0% | 59.8% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.50e-01 | 94.4% | 72.3% |
| 3eniC00 | 2.50.10.10 | Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A | 0.51 | 47.0 | 3.34e-01 | 100.0% | 35.4% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.50 | 43.0 | 4.18e-01 | 100.0% | 86.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.68 | 61.0 | 5.92e-01 | 100.0% | 88.1% |
| 4952629 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 49.0 | 5.37e-01 | 100.0% | 95.0% |
| 3190573 | 706.2.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.66 | 30.0 | 4.50e-01 | 93.6% | 100.0% |
| 4952430 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 49.0 | 5.16e-01 | 100.0% | 88.2% |
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 59.0 | 5.09e-01 | 100.0% | 79.0% |
| 3685834 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.63 | 41.0 | 4.32e-01 | 95.2% | 72.2% |
| 3513366 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.59 | 54.0 | 4.83e-01 | 100.0% | 90.3% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.59 | 51.0 | 4.91e-01 | 100.0% | 83.6% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.58 | 52.0 | 4.91e-01 | 100.0% | 87.6% |
| 3223328 | 304.8.1.78 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 | 0.57 | 33.0 | 3.54e-01 | 86.4% | 66.7% |
| 3596851 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 27.0 | 3.14e-01 | 92.0% | 65.6% |
| 3585212 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.54 | 49.0 | 4.07e-01 | 100.0% | 85.1% |
| 4941817 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 36.0 | 3.80e-01 | 95.2% | 78.9% |
| 3782066 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 40.0 | 2.71e-01 | 100.0% | 23.0% |
| 3657712 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.51 | 37.0 | 3.36e-01 | 96.0% | 54.7% |
| 3781225 | 11.1.1.409 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_C | 0.51 | 45.0 | 3.59e-01 | 100.0% | 68.8% |