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BDI54902.1
Arc-VirLC711078__BDI54902.1__X__00008
Identity
- Accession:
- LC711078 ↗
- Protein ID:
- BDI54902.1 ↗
- Kingdom:
- archaea
Quality
67.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Verdandiviridae›
Tonitrusvirus›
Thorarchaeia_virus_VerdaV2
TaxID: 3070171
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-122
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 44.0 | 3.94e-01 | 86.0% | 88.9% |
| 2aqwA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 38.0 | 2.72e-01 | 96.3% | 24.9% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.53 | 39.0 | 3.52e-01 | 85.0% | 54.1% |
| 1nu7D01 | 1.20.120.750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 | 0.51 | 40.0 | 3.72e-01 | 83.2% | 83.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3539619 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.63 | 45.0 | 4.06e-01 | 86.0% | 53.3% |
| 4680153 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.60 | 45.0 | 4.16e-01 | 86.0% | 60.7% |
| 3428249 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 32.0 | 3.88e-01 | 85.0% | 81.4% |
| 4023308 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.58 | 47.0 | 3.99e-01 | 87.9% | 80.0% |
| 3608193 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.52 | 31.0 | 2.50e-01 | 79.4% | 29.5% |