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BDI54910.1

Arc-Vir

LC711078__BDI54910.1__X__00016

Identity

Accession:
LC711078 ↗
Protein ID:
BDI54910.1 ↗
Kingdom:
archaea

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Verdandiviridae› Tonitrusvirus› Thorarchaeia_virus_VerdaV2

TaxID: 3070171

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00086__D6-65
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 48.0 5.41e-01 79.0% 79.4%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 47.0 5.21e-01 77.8% 80.0%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 40.0 3.64e-01 70.4% 41.5%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 45.0 4.90e-01 77.8% 79.7%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 37.0 4.08e-01 72.8% 63.6%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 41.0 3.34e-01 100.0% 35.6%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.03e-01 76.5% 52.6%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.42e-01 74.1% 92.4%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 35.0 3.79e-01 85.2% 68.2%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 34.0 4.04e-01 70.4% 81.8%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.94e-01 82.7% 84.9%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.59 44.0 4.30e-01 77.8% 80.2%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 3.98e-01 92.6% 67.0%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.57 43.0 3.83e-01 79.0% 76.1%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 42.0 3.48e-01 79.0% 75.7%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 4.28e-01 82.7% 82.4%
2w5aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 4.27e-01 81.5% 90.6%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.54 44.0 3.66e-01 93.8% 99.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4250239 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.77 48.0 5.34e-01 77.8% 80.0%
4252940 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.73 45.0 4.98e-01 77.8% 78.5%
3633382 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.72 43.0 3.47e-01 75.3% 31.0%
4433263 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.72 45.0 4.90e-01 77.8% 78.5%
4315771 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.71 40.0 4.45e-01 70.4% 69.2%
3254316 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.71 41.0 4.02e-01 71.6% 52.2%
4149372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 41.0 4.50e-01 75.3% 70.8%
4265586 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.69 47.0 4.01e-01 81.5% 44.8%
5056791 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 47.0 4.78e-01 77.8% 72.5%
4119533 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.68 43.0 4.89e-01 74.1% 88.3%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.68 48.0 4.68e-01 88.9% 67.4%
5029363 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.67 41.0 4.68e-01 72.8% 83.3%
5035886 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.66 46.0 4.77e-01 82.7% 77.3%
3600862 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 43.0 4.41e-01 82.7% 71.2%
5041307 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 43.0 3.00e-01 70.4% 21.9%
3336463 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 39.0 3.97e-01 84.0% 64.1%
3598854 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 46.0 3.81e-01 76.5% 44.3%
5009170 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 43.0 4.47e-01 70.4% 78.7%
5001168 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.62 45.0 4.22e-01 76.5% 63.0%
3479868 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 40.0 3.87e-01 74.1% 58.9%
4338934 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 38.0 4.12e-01 70.4% 78.5%
3673136 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.53e-01 77.8% 86.9%
3902096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 44.0 3.59e-01 82.7% 70.3%
3905030 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 3.05e-01 80.2% 64.1%
5001065 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.51 38.0 2.59e-01 80.2% 23.7%
3700003 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 38.0 2.51e-01 77.8% 30.9%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.83e-01 84.0% 78.8%
3499502 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 35.0 2.29e-01 74.1% 99.3%