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BDI54916.1
Arc-VirLC711078__BDI54916.1__X__00022
Identity
- Accession:
- LC711078 ↗
- Protein ID:
- BDI54916.1 ↗
- Kingdom:
- archaea
Quality
84.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Verdandiviridae›
Tonitrusvirus›
Thorarchaeia_virus_VerdaV2
TaxID: 3070171
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-76
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.78 | 59.0 | 5.67e-01 | 85.2% | 71.0% |
| 2incA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.76 | 63.0 | 3.58e-01 | 88.9% | 10.4% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.72 | 60.0 | 3.43e-01 | 88.9% | 10.5% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 48.0 | 4.20e-01 | 72.2% | 81.7% |
| 3u5eU00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.63 | 43.0 | 3.61e-01 | 74.1% | 80.0% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.60 | 46.0 | 4.64e-01 | 96.3% | 83.6% |
| 2vszB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 48.0 | 3.82e-01 | 100.0% | 94.9% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.55 | 44.0 | 3.17e-01 | 87.0% | 56.9% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 46.0 | 3.37e-01 | 100.0% | 38.3% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.51 | 46.0 | 3.19e-01 | 100.0% | 60.2% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.51 | 43.0 | 2.78e-01 | 100.0% | 22.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3749973 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.83 | 62.0 | 6.76e-01 | 81.5% | 95.6% |
| 3878134 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.78 | 69.0 | 6.90e-01 | 98.1% | 94.5% |
| 2335232 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.74 | 37.0 | 2.84e-01 | 94.4% | 22.2% |
| 3602485 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 37.0 | 2.73e-01 | 94.4% | 21.5% |
| 3943466 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.66 | 42.0 | 2.92e-01 | 100.0% | 21.9% |
| 4882574 | 375.1.1.35 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2753_ZBP | 0.63 | 50.0 | 4.90e-01 | 87.0% | 91.4% |
| 3957538 | 101.1.2.231 ↗ | alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot | 0.58 | 37.0 | 2.63e-01 | 98.1% | 23.3% |
| 3481139 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 48.0 | 4.68e-01 | 92.6% | 96.7% |
| 4955292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 3.31e-01 | 87.0% | 87.8% |
| 167954 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 39.0 | 2.80e-01 | 100.0% | 29.3% |
| 5024808 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 43.0 | 3.18e-01 | 100.0% | 34.5% |
| 3966164 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 43.0 | 3.18e-01 | 100.0% | 34.5% |
| 370599 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.52 | 45.0 | 3.32e-01 | 100.0% | 37.1% |
| 2790593 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.52 | 46.0 | 3.34e-01 | 100.0% | 36.7% |
| 4928059 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 37.0 | 2.76e-01 | 100.0% | 31.5% |
| 3286513 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 46.0 | 3.39e-01 | 100.0% | 39.3% |
| 5005002 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 42.0 | 3.13e-01 | 100.0% | 34.5% |
| 4031872 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 42.0 | 3.12e-01 | 100.0% | 34.5% |
| 3287015 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.51 | 45.0 | 3.29e-01 | 100.0% | 37.9% |
| 5062671 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 40.0 | 3.00e-01 | 100.0% | 33.8% |
| 5009839 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.50 | 45.0 | 3.32e-01 | 100.0% | 38.6% |
| 4082847 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.50 | 42.0 | 3.11e-01 | 100.0% | 35.7% |
| 5018368 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.50 | 42.0 | 3.02e-01 | 100.0% | 31.2% |
| 5060006 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.21e-01 | 90.7% | 78.2% |