Back to structures

BDI54943.1

Arc-Vir

LC711079__BDI54943.1__X__00016

Identity

Accession:
LC711079 ↗
Protein ID:
BDI54943.1 ↗
Kingdom:
archaea

Quality

96.8 mean pLDDT

Taxonomy

TaxID: 2944669

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.70 50.0 3.35e-01 100.0% 20.5%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.69 50.0 4.46e-01 83.1% 55.8%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 53.0 4.17e-01 90.9% 88.2%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.63 53.0 4.15e-01 90.9% 73.9%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.63 44.0 4.19e-01 98.7% 62.2%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.62 47.0 3.61e-01 81.8% 36.7%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.61 41.0 3.40e-01 70.1% 50.7%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 3.60e-01 70.1% 48.4%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 3.58e-01 81.8% 86.8%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 51.0 3.30e-01 96.1% 31.0%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.41e-01 98.7% 44.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 37.0 4.12e-01 92.2% 83.3%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.42e-01 98.7% 42.4%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.90e-01 76.6% 95.7%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 51.0 3.36e-01 100.0% 46.0%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 3.76e-01 89.6% 93.2%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.56 47.0 3.78e-01 96.1% 82.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 43.0 4.11e-01 96.1% 74.2%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.48e-01 83.1% 97.9%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 48.0 3.36e-01 100.0% 53.8%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.76e-01 75.3% 89.8%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 47.0 3.07e-01 100.0% 41.2%
4d9uA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.69e-01 75.3% 88.6%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.54e-01 83.1% 91.7%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.66e-01 76.6% 94.5%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 45.0 2.80e-01 100.0% 35.6%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 46.0 3.23e-01 100.0% 70.5%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 35.0 3.22e-01 70.1% 72.2%
4crsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.75e-01 96.1% 76.1%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 47.0 3.34e-01 100.0% 91.9%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.65e-01 77.9% 100.0%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 43.0 3.89e-01 100.0% 64.8%
5xk2A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 45.0 3.13e-01 100.0% 41.7%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 43.0 3.68e-01 93.5% 92.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 40.0 4.04e-01 100.0% 85.9%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 44.0 3.20e-01 94.8% 61.8%
5d9hA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.48e-01 74.0% 92.0%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.58e-01 77.9% 100.0%
2hw6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.52e-01 75.3% 94.3%
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.39e-01 75.3% 89.2%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.44e-01 94.8% 69.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3900936 247.1.1.5 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.77 54.0 3.54e-01 100.0% 19.6%
3940325 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 47.0 3.21e-01 72.7% 30.4%
3263883 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.66 45.0 2.79e-01 71.4% 24.4%
4509605 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.66 57.0 4.65e-01 94.8% 94.3%
4661838 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.66 56.0 4.23e-01 94.8% 93.7%
2755883 331.19.1.1 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin 0.63 44.0 4.19e-01 100.0% 60.9%
3230195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 55.0 3.55e-01 96.1% 94.2%
3616668 5.1.4.56 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.62 55.0 3.46e-01 97.4% 30.4%
4643894 9.1.1.8 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.62 54.0 4.29e-01 97.4% 91.3%
4975453 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.62 55.0 4.24e-01 97.4% 65.1%
3296838 4099.1.1.14 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Knl1_RWD_C 0.61 50.0 4.69e-01 88.3% 85.3%
2103527 11.1.1.344 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_56 0.61 41.0 3.91e-01 70.1% 80.6%
3932376 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.61 49.0 3.05e-01 88.3% 84.1%
3633627 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 42.0 3.42e-01 90.9% 37.9%
3626089 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.61 53.0 3.13e-01 98.7% 49.5%
4135922 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.60 52.0 4.08e-01 94.8% 92.5%
3489068 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.60 54.0 4.44e-01 100.0% 98.6%
5046652 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.60 52.0 3.97e-01 97.4% 82.7%
4539150 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.60 53.0 4.39e-01 98.7% 100.0%
4228437 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.59 50.0 4.20e-01 92.2% 85.4%
4247114 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.59 53.0 3.86e-01 97.4% 89.5%
3802876 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 51.0 3.37e-01 94.8% 46.3%
4948235 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 41.0 2.95e-01 74.0% 88.0%
3419526 5.1.5.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.58 51.0 3.29e-01 96.1% 27.9%
3217505 9.1.1.55 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.57 42.0 3.76e-01 85.7% 53.9%
3287259 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.57 48.0 3.17e-01 93.5% 46.3%
3967853 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.57 47.0 4.06e-01 98.7% 59.1%
3509388 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 2.99e-01 93.5% 17.5%
5025494 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 39.0 3.00e-01 74.0% 35.0%
3719725 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.56 46.0 3.64e-01 92.2% 95.8%
3778085 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.90e-01 92.2% 83.3%
3686459 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.55 45.0 3.02e-01 94.8% 96.6%
None 0.55 46.0 2.72e-01 94.8% 33.4%
3697960 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.55 46.0 3.81e-01 97.4% 84.0%
3853086 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.00e-01 92.2% 93.1%
4544477 3369.1.1.2 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › VAS1_LD 0.55 49.0 4.01e-01 100.0% 75.7%
3997807 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 41.0 3.29e-01 81.8% 57.5%
1392301 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 40.0 3.24e-01 79.2% 57.1%
3937930 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.54 43.0 2.75e-01 85.7% 26.7%
3709124 5.1.5.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.54 47.0 2.87e-01 94.8% 25.5%
3276059 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.54 47.0 3.00e-01 98.7% 36.5%
3516548 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 40.0 3.18e-01 80.5% 49.1%
3931299 4099.1.1.20 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.54 46.0 3.80e-01 94.8% 63.6%
3258415 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 47.0 3.24e-01 98.7% 43.0%
3831470 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 44.0 3.09e-01 94.8% 45.7%
3289783 11.1.1.600 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RskA_C 0.52 42.0 3.76e-01 85.7% 98.1%
4285345 4099.1.1.20 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.52 40.0 3.49e-01 92.2% 53.3%
5018923 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.52 38.0 3.83e-01 100.0% 78.7%
3781119 5.1.4.97 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.52 44.0 2.80e-01 96.1% 26.2%
2885136 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.52 44.0 2.73e-01 97.4% 27.4%
3535709 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 41.0 2.76e-01 87.0% 44.2%
3437633 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.51 47.0 3.10e-01 100.0% 61.3%
3223991 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.92e-01 96.1% 57.7%
4981443 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.50 43.0 2.78e-01 97.4% 29.9%