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BDI54994.1

Arc-Vir

LC711080__BDI54994.1__X__00036

Identity

Accession:
LC711080 ↗
Protein ID:
BDI54994.1 ↗
Kingdom:
archaea

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Verdandiviridae› Dolusvirus› Lokiarchaeia_virus_VerdaV4

TaxID: 3070172

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-40
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.76 65.0 4.52e-01 97.5% 87.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.75 66.0 4.47e-01 100.0% 80.0%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.75 62.0 5.03e-01 97.5% 48.7%
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.75 60.0 4.91e-01 95.0% 72.5%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 59.0 4.85e-01 90.0% 62.2%
2m6mA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 54.0 4.37e-01 95.0% 57.8%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.66 54.0 4.20e-01 97.5% 51.0%
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.65 51.0 4.26e-01 90.0% 71.1%
2eqgA01 4.10.240.30 Few Secondary Structures › Irregular › CD2-Gal4 › 0.64 47.0 4.80e-01 90.0% 89.5%
1x4wA00 4.10.1110.10 Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger 0.62 46.0 4.02e-01 85.0% 59.7%
2ecjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 51.0 4.67e-01 97.5% 70.7%
1rmdA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 48.0 3.93e-01 95.0% 51.2%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 49.0 4.26e-01 92.5% 87.9%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 49.0 4.13e-01 97.5% 61.5%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 41.0 4.10e-01 92.5% 93.0%
2od1A00 6.10.140.2220 Special › Helix non-globular › Helix Hairpins › 0.52 36.0 3.53e-01 82.5% 70.0%
5kztA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 36.0 2.26e-01 77.5% 54.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739083 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.78 65.0 5.31e-01 95.0% 66.7%
3907189 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.75 62.0 4.79e-01 97.5% 53.7%
4304577 377.1.3.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS 0.75 51.0 5.51e-01 75.0% 96.7%
5010496 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.74 55.0 5.34e-01 87.5% 73.3%
3639696 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 50.0 5.34e-01 72.5% 100.0%
3562587 377.1.1.34 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 0.73 49.0 5.39e-01 72.5% 100.0%
3717167 376.1.5.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.72 53.0 5.33e-01 80.0% 80.0%
3408969 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.71 52.0 4.32e-01 77.5% 44.3%
3641183 207.1.1.124 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › At3g27290_F_box_C 0.69 59.0 3.60e-01 97.5% 36.4%
3809619 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 56.0 5.13e-01 97.5% 98.2%
3928425 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 53.0 4.31e-01 92.5% 57.6%
3626567 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 52.0 4.41e-01 92.5% 57.3%
4959344 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.67 54.0 3.37e-01 95.0% 16.4%
4030676 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 52.0 4.63e-01 97.5% 83.1%
3506139 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.65 45.0 3.59e-01 75.0% 37.8%
3211001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.64 51.0 4.11e-01 97.5% 50.0%
3645378 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 48.0 4.39e-01 90.0% 68.3%
5067602 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 44.0 4.44e-01 80.0% 80.0%
5076504 376.1.1.183 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Prok-RING_1 0.61 46.0 4.47e-01 92.5% 90.0%
3405764 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.55 40.0 4.07e-01 82.5% 80.0%