Back to structures

LC739535.1__BDU12606.1__X__00021

Bact-Vir

LC739535.1__BDU12606.1__X__00021

Identity

Accession:
LC739535 ↗
Kingdom:
phage

Quality

63.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92
PDB
D2 high residues 315-364
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 58.0 3.96e-01 100.0% 46.8%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.64 40.0 3.80e-01 80.0% 52.5%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.09e-01 86.0% 100.0%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.25e-01 94.0% 69.0%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.63 55.0 4.02e-01 100.0% 55.8%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 3.99e-01 80.0% 86.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 54.0 4.43e-01 98.0% 80.6%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 47.0 4.44e-01 86.0% 95.2%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 52.0 3.91e-01 100.0% 72.3%
2bvfA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 50.0 3.73e-01 100.0% 68.1%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 50.0 3.81e-01 100.0% 71.9%
2w3sA04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 48.0 3.85e-01 100.0% 85.1%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 3.30e-01 100.0% 22.1%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 49.0 3.75e-01 100.0% 76.4%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 52.0 4.20e-01 100.0% 93.8%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 3.91e-01 98.0% 65.2%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 43.0 3.95e-01 86.0% 84.7%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 3.97e-01 100.0% 88.5%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 46.0 3.70e-01 100.0% 85.6%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 50.0 4.03e-01 100.0% 93.9%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.19e-01 92.0% 77.3%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 3.42e-01 100.0% 92.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 44.0 3.40e-01 90.0% 57.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.57e-01 90.0% 71.4%
2m1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 3.70e-01 100.0% 77.6%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 46.0 3.65e-01 100.0% 88.0%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 41.0 3.34e-01 82.0% 93.9%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 3.59e-01 100.0% 76.5%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.90e-01 100.0% 79.3%
1wgoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.60e-01 96.0% 71.7%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 2.80e-01 82.0% 30.4%
2qejD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 45.0 3.53e-01 100.0% 78.8%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 46.0 3.54e-01 100.0% 79.5%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 3.91e-01 100.0% 92.4%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.59e-01 92.0% 68.2%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.37e-01 100.0% 41.7%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 3.24e-01 100.0% 77.9%
6eo5B01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 43.0 2.85e-01 100.0% 38.4%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.90e-01 82.0% 56.8%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.09e-01 100.0% 61.5%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.51 39.0 3.87e-01 86.0% 92.6%
2mcaA00 2.60.40.2890 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 0.51 40.0 3.31e-01 92.0% 48.5%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 40.0 3.34e-01 100.0% 87.7%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 2.67e-01 82.0% 31.4%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 42.0 3.27e-01 100.0% 77.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
146288 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.69 58.0 5.80e-01 100.0% 92.2%
4432442 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.67 38.0 2.54e-01 80.0% 14.1%
3593222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.61e-01 94.0% 96.3%
4082437 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 52.0 5.06e-01 92.0% 92.7%
197051 4.1.1.74 beta barrels › SH3 › SH3 › SH3 › DUF3247 0.63 54.0 4.43e-01 98.0% 80.6%
3222026 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.62 53.0 4.15e-01 100.0% 80.0%
4174845 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.62 46.0 3.09e-01 78.0% 53.1%
4306152 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.61 45.0 3.14e-01 78.0% 62.6%
3698553 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.61 47.0 4.58e-01 82.0% 96.4%
3386428 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.61 48.0 3.19e-01 90.0% 33.0%
4231368 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.60 52.0 3.56e-01 100.0% 48.4%
3241915 325.1.1.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.60 51.0 3.02e-01 100.0% 23.5%
5045701 221.1.3.0 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.60 49.0 3.77e-01 100.0% 93.3%
3978661 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 50.0 4.10e-01 92.0% 57.8%
4412641 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.60 43.0 2.99e-01 76.0% 64.5%
4927554 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.21e-01 96.0% 75.3%
3225783 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.59 49.0 3.33e-01 100.0% 48.1%
3002584 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.58 39.0 3.42e-01 90.0% 44.3%
3196947 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 2.78e-01 100.0% 13.0%
3970673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.33e-01 94.0% 81.5%
4493828 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.57 48.0 3.00e-01 96.0% 29.3%
3387649 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 43.0 3.23e-01 86.0% 45.2%
3209401 11.1.1.837 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TAF2_3rd 0.56 47.0 3.53e-01 96.0% 81.5%
3299228 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 48.0 3.59e-01 100.0% 67.1%
2770736 4967.1.1.14 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb 0.56 42.0 2.82e-01 80.0% 54.6%
3227541 10.4.1.9 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.55 47.0 3.80e-01 100.0% 57.1%
5018190 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 43.0 3.05e-01 86.0% 35.0%
3613204 11.1.1.531 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF11 0.55 46.0 3.40e-01 96.0% 55.7%
3781 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.55 42.0 2.83e-01 82.0% 58.9%
4300471 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.55 39.0 3.17e-01 78.0% 37.1%
4930160 1.1.2.20 beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central 0.54 46.0 3.46e-01 100.0% 71.9%
4426192 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.54 46.0 2.87e-01 100.0% 28.2%
4189243 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.54 40.0 3.05e-01 84.0% 43.1%
3615237 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 39.0 2.40e-01 80.0% 16.4%
152594 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.54 46.0 3.63e-01 100.0% 81.6%
4572309 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 45.0 3.44e-01 100.0% 82.3%
3469360 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.53 43.0 3.74e-01 92.0% 90.0%
4089092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 45.0 2.93e-01 98.0% 58.3%
4028554 10.30.1.0 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.53 46.0 3.92e-01 100.0% 86.9%
4012961 221.17.1.0 a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 0.52 42.0 3.10e-01 100.0% 53.1%
3813055 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.52 35.0 2.09e-01 70.0% 14.7%
165634 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.51 42.0 3.41e-01 100.0% 84.7%
3961990 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 37.0 3.34e-01 82.0% 66.7%
4968929 1.1.7.15 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 0.51 42.0 3.18e-01 98.0% 96.3%
4332271 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.50 40.0 3.11e-01 92.0% 56.1%
4680572 10.32.1.18 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.50 41.0 3.10e-01 100.0% 57.2%
4886012 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.50 38.0 2.27e-01 84.0% 33.9%
D3 high residues 403-495
PDB
D4 medium residues 99-192
PDB
D5 medium residues 196-295
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6k0oA00 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.58 38.0 3.81e-01 88.0% 64.4%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 30.0 3.18e-01 73.0% 58.2%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 38.0 3.38e-01 75.0% 85.9%
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.50 38.0 3.90e-01 92.0% 87.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1580235 3009.1.1.1 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.56 37.0 3.79e-01 91.0% 68.4%
3184107 4156.1.1.1 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 0.55 34.0 3.20e-01 91.0% 49.6%
4034310 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.54 39.0 3.13e-01 75.0% 88.8%
5048072 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 40.0 3.29e-01 81.0% 96.0%