Back to structures

LC739537.1__BDU13321.1__X__00205

Bact-Vir

LC739537.1__BDU13321.1__X__00205

Identity

Accession:
LC739537 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-117
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.75 63.0 5.09e-01 91.5% 87.1%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.69 47.0 3.82e-01 70.4% 61.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.67 58.0 4.57e-01 95.8% 65.8%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.39e-01 91.5% 78.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 56.0 4.95e-01 98.6% 84.6%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.63 56.0 3.28e-01 98.6% 47.6%
2kzbA00 2.60.40.2830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 3.78e-01 73.2% 87.7%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 51.0 3.58e-01 90.1% 34.0%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 49.0 3.82e-01 84.5% 72.5%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.62 35.0 3.33e-01 84.5% 44.3%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 50.0 3.23e-01 88.7% 46.8%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.62 56.0 4.25e-01 100.0% 81.5%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.61 53.0 3.78e-01 100.0% 91.6%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.61 44.0 3.87e-01 78.9% 64.6%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.60 53.0 4.50e-01 98.6% 88.1%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 4.68e-01 91.5% 98.9%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.25e-01 90.1% 90.0%
3tt2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 50.0 3.27e-01 93.0% 42.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.60 52.0 3.58e-01 98.6% 72.5%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 3.50e-01 78.9% 59.2%
4w82A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.59 41.0 3.32e-01 73.2% 59.1%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.59 50.0 4.35e-01 100.0% 91.7%
7pk0A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 48.0 3.98e-01 90.1% 92.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 43.0 4.42e-01 87.3% 79.7%
2e63A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 46.0 3.52e-01 85.9% 63.5%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 34.0 2.65e-01 81.7% 25.8%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 4.06e-01 84.5% 100.0%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 43.0 3.17e-01 81.7% 68.8%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.20e-01 100.0% 49.2%
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.56 45.0 3.88e-01 100.0% 54.2%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.55 43.0 3.90e-01 84.5% 93.8%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 3.01e-01 97.2% 48.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.93e-01 90.1% 22.4%
3n7zA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.49e-01 91.5% 79.0%
3mezD00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.54 43.0 3.67e-01 85.9% 74.1%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 3.05e-01 98.6% 81.4%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.57e-01 80.3% 86.3%
5d5gA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 43.0 3.69e-01 85.9% 71.6%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 39.0 3.78e-01 83.1% 74.4%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.92e-01 95.8% 33.3%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.99e-01 98.6% 93.5%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.82e-01 100.0% 96.7%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 45.0 3.23e-01 95.8% 36.4%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.60e-01 95.8% 87.9%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.90e-01 100.0% 42.3%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.72e-01 97.2% 54.6%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.51 44.0 4.32e-01 100.0% 92.2%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.50 41.0 3.64e-01 90.1% 81.7%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.08e-01 83.1% 81.6%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 41.0 2.87e-01 97.2% 50.7%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 41.0 4.10e-01 90.1% 85.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235525 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.78 59.0 4.19e-01 85.9% 28.5%
3216450 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.71 57.0 4.44e-01 87.3% 50.7%
3975056 241.13.1.0 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.71 52.0 4.28e-01 78.9% 48.5%
3624211 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.70 59.0 4.44e-01 90.1% 89.1%
3687996 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.69 52.0 3.54e-01 80.3% 90.4%
3514632 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.69 56.0 3.47e-01 85.9% 58.2%
3939638 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.69 55.0 4.69e-01 85.9% 84.2%
4529966 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 55.0 3.50e-01 85.9% 36.1%
4021982 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.68 51.0 3.34e-01 80.3% 87.1%
4583801 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.67 57.0 3.96e-01 95.8% 38.4%
5075159 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.67 58.0 4.44e-01 97.2% 79.4%
4404709 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 56.0 4.20e-01 94.4% 40.0%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 60.0 5.12e-01 100.0% 88.2%
4969673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 58.0 3.74e-01 97.2% 32.4%
4003932 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.65 58.0 4.85e-01 98.6% 94.2%
3614362 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.65 57.0 4.20e-01 100.0% 87.7%
3953675 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.65 50.0 5.17e-01 98.6% 90.8%
3251391 5.1.4.297 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.64 46.0 2.91e-01 74.6% 35.9%
3372169 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.64 46.0 3.90e-01 74.6% 98.3%
4011234 4291.1.1.0 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein 0.64 49.0 3.07e-01 83.1% 47.5%
3581438 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.64 52.0 3.38e-01 93.0% 55.1%
3597395 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 2.74e-01 83.1% 45.4%
3263006 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.63 57.0 4.38e-01 100.0% 87.5%
4467900 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.63 57.0 4.05e-01 100.0% 56.7%
3766391 77.1.1.2 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.63 58.0 4.37e-01 100.0% 91.9%
5046458 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.63 55.0 4.21e-01 100.0% 73.7%
3228083 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 49.0 3.39e-01 87.3% 23.8%
4218863 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.63 51.0 3.52e-01 87.3% 80.4%
4124063 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.62 49.0 4.56e-01 85.9% 93.3%
3874056 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.62 43.0 4.74e-01 91.5% 94.5%
3390570 213.1.1.19 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.62 52.0 4.06e-01 93.0% 79.1%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.62 47.0 3.53e-01 83.1% 69.2%
3620047 5.1.4.377 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.61 51.0 3.46e-01 97.2% 93.4%
3638210 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.61 54.0 3.95e-01 100.0% 83.4%
4518121 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.61 49.0 4.42e-01 88.7% 86.0%
4483985 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.61 46.0 4.33e-01 83.1% 93.3%
3923484 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.61 50.0 3.26e-01 93.0% 55.6%
3626667 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.61 43.0 2.73e-01 76.1% 30.3%
3791305 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 51.0 3.68e-01 94.4% 60.0%
847 9.1.1.20 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3255 0.60 44.0 3.70e-01 80.3% 76.2%
3281893 71.2.1.1 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.59 52.0 3.90e-01 100.0% 68.1%
4976692 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.59 50.0 3.53e-01 97.2% 63.3%
3741285 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 47.0 4.29e-01 85.9% 69.5%
3569527 213.1.1.16 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 49.0 3.75e-01 91.5% 77.0%
3703666 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.59 47.0 3.58e-01 87.3% 58.2%
4302456 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 47.0 4.39e-01 87.3% 72.2%
4028603 5.1.4.402 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.58 43.0 2.68e-01 80.3% 47.9%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 41.0 4.46e-01 98.6% 96.4%
3244141 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.57 43.0 2.69e-01 80.3% 35.9%
3843785 292.2.1.10 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N 0.57 45.0 4.04e-01 84.5% 66.3%
4055106 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.57 45.0 3.36e-01 87.3% 36.2%
1694865 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.57 43.0 3.58e-01 84.5% 74.1%
3707066 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.56 48.0 3.44e-01 95.8% 74.4%
3608111 5.1.4.402 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.56 47.0 3.00e-01 100.0% 46.7%
3499683 5.1.5.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N 0.55 45.0 2.92e-01 94.4% 79.7%
3335113 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.54 43.0 4.03e-01 88.7% 82.2%
3908432 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 45.0 2.87e-01 95.8% 55.1%
1682159 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.53 43.0 3.69e-01 85.9% 71.6%
4100088 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.53 42.0 3.50e-01 85.9% 66.4%
3815764 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.53 42.0 3.50e-01 87.3% 89.6%
3617805 10.1.1.23 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.52 42.0 3.20e-01 93.0% 71.6%
5055345 5.1.5.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_ACSF4 0.52 43.0 2.87e-01 100.0% 93.1%
3803938 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 34.0 3.41e-01 88.7% 65.3%
1549085 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.50 41.0 3.51e-01 91.5% 90.8%
441013 79.1.1.1 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C 0.50 35.0 2.55e-01 74.6% 25.1%