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LC754405.1__BDX35469.1__MN1_020__00002

Bact-Vir

LC754405.1__BDX35469.1__MN1_020__00002

Identity

Accession:
LC754405 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_MN1

TaxID: 3018631

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-146
PDB
Domain cluster: rep: NC_007149.1__YP_249596.1__VVP4_p28__00028__D493-632
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 40.0 4.66e-01 85.4% 84.0%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.25e-01 78.5% 94.7%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.61 35.0 4.13e-01 83.3% 81.6%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 39.0 4.42e-01 89.6% 91.2%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 4.48e-01 89.6% 87.1%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.56 38.0 4.06e-01 89.6% 79.4%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.56 40.0 3.62e-01 74.3% 87.9%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 4.72e-01 91.0% 95.5%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.04e-01 100.0% 90.3%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 4.26e-01 81.2% 100.0%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 4.03e-01 89.6% 92.8%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 4.20e-01 77.1% 99.2%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 4.15e-01 91.0% 79.5%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 4.29e-01 85.4% 97.3%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 4.30e-01 83.3% 100.0%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.53e-01 89.6% 90.8%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 4.03e-01 77.1% 89.2%
5l73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.31e-01 94.4% 96.0%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.90e-01 87.5% 95.5%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 4.30e-01 93.1% 91.5%
4bz4A00 2.60.120.1220 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.91e-01 89.6% 97.5%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 40.0 3.35e-01 81.9% 56.1%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.93e-01 81.2% 97.4%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.68e-01 86.8% 79.3%
5jqyA02 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.51 40.0 3.61e-01 81.9% 67.9%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.82e-01 91.7% 83.7%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 4.12e-01 83.3% 100.0%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 4.04e-01 91.0% 90.6%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 4.14e-01 89.6% 96.0%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 38.0 4.12e-01 81.2% 94.3%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 38.0 4.05e-01 89.6% 94.2%
5f7uA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 4.11e-01 90.3% 94.4%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.50 40.0 3.24e-01 83.3% 91.7%
3seeA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.65e-01 89.6% 88.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 52.0 5.55e-01 86.1% 99.2%
3818454 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 50.0 4.36e-01 90.3% 99.6%
3333811 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 49.0 4.34e-01 90.3% 99.5%
3207356 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.60 47.0 4.21e-01 82.6% 94.0%
4929792 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 39.0 4.51e-01 92.4% 98.0%
5014927 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.57 38.0 4.24e-01 88.9% 87.3%
4568752 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.57 38.0 4.24e-01 88.9% 87.3%
4003166 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.57 40.0 4.25e-01 84.7% 82.4%
3919527 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 40.0 4.52e-01 92.4% 98.1%
4127487 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.57 45.0 4.16e-01 84.0% 96.8%
3408524 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 41.0 4.48e-01 86.1% 91.7%
3608754 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.56 48.0 4.17e-01 93.1% 80.4%
3585061 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 42.0 4.28e-01 91.7% 81.4%
3973531 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 48.0 4.86e-01 92.4% 95.0%
3265085 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.55 45.0 3.92e-01 89.6% 88.9%
139710 10.32.1.27 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 0.55 45.0 4.72e-01 91.0% 95.5%
3246388 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 4.14e-01 73.6% 84.9%
5041250 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 38.0 4.24e-01 88.9% 95.2%
3933402 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 40.0 4.37e-01 78.5% 93.9%
3811679 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.55 39.0 3.03e-01 73.6% 66.3%
3328172 10.1.1.12 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.55 48.0 3.98e-01 100.0% 86.1%
3252010 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.55 45.0 3.90e-01 89.6% 89.6%
3215895 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 44.0 4.53e-01 91.7% 90.7%
4361685 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.54 45.0 4.22e-01 89.6% 98.9%
152125 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 41.0 4.19e-01 81.2% 100.0%
5043798 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 42.0 3.92e-01 84.0% 100.0%
4991701 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 41.0 3.64e-01 81.2% 78.1%
5039646 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 39.0 4.21e-01 75.0% 93.3%
5039010 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 45.0 4.71e-01 91.0% 100.0%
3245210 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.54 41.0 4.28e-01 79.2% 91.5%
4092778 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 44.0 4.57e-01 91.0% 96.9%
5059835 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 39.0 4.07e-01 75.0% 84.5%
3810972 10.1.1.12 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.53 47.0 4.03e-01 100.0% 91.8%
3204303 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.53 43.0 3.86e-01 88.2% 100.0%
3390429 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 41.0 4.16e-01 81.9% 100.0%
4202051 10.32.1.271 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27237 0.53 33.0 3.92e-01 81.2% 98.9%
5005599 10.1.2.201 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PF27237 0.53 33.0 3.92e-01 81.2% 98.9%
3923894 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 44.0 4.30e-01 91.7% 88.0%
5064594 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 42.0 4.15e-01 86.1% 90.3%
3958068 10.18.1.0 ↗ beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like 0.52 44.0 4.10e-01 93.8% 84.3%
5005245 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 40.0 3.45e-01 81.9% 68.3%
5041880 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 31.0 3.80e-01 87.5% 95.6%
3381013 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.51 38.0 3.70e-01 90.3% 69.4%
4314164 10.32.1.74 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cry1Ac_dom-VII 0.51 43.0 4.15e-01 90.3% 98.1%
3217930 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 42.0 4.17e-01 91.7% 83.8%
3223483 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 4.12e-01 91.7% 88.5%
399921 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 42.0 4.24e-01 91.0% 89.0%
3474323 10.32.1.33 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 0.51 38.0 3.58e-01 79.2% 95.6%
5027268 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 4.22e-01 92.4% 92.3%
3486965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 3.88e-01 80.6% 84.7%
4108911 10.32.1.74 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cry1Ac_dom-VII 0.50 42.0 4.24e-01 90.3% 95.0%
4003995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 4.19e-01 91.7% 90.0%
3212513 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 41.0 3.91e-01 89.6% 83.4%
144100 10.32.1.169 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4627 0.50 41.0 3.65e-01 89.6% 88.3%
D2 medium residues 147-272
PDB