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LC754405.1__BDX35504.1__MN1_370__00037

Bact-Vir

LC754405.1__BDX35504.1__MN1_370__00037

Identity

Accession:
LC754405 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_MN1

TaxID: 3018631

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-75_90-138
PDB
D2 high residues 174-260
PDB
Domain cluster: rep: MT732475.1__QQV91569.1__Peternella1_33__00033__D134-206
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.38e-01 70.1% 49.5%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 37.0 3.62e-01 70.1% 91.8%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 37.0 3.63e-01 74.7% 98.9%
3to8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 36.0 3.52e-01 77.0% 98.1%
2mkcA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 3.49e-01 81.6% 86.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827225 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 38.0 3.69e-01 78.2% 95.0%
4083851 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 37.0 3.36e-01 75.9% 70.4%
3759343 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.10e-01 72.4% 45.9%
3195024 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 2.55e-01 75.9% 27.8%
4025699 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 2.68e-01 74.7% 37.1%