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LC754405.1__BDX35558.1__MN1_910__00091
Bact-VirLC754405.1__BDX35558.1__MN1_910__00091
Identity
- Accession:
- LC754405 ↗
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-107
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.71 | 42.0 | 4.47e-01 | 86.9% | 65.9% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.69 | 57.0 | 5.64e-01 | 89.9% | 88.5% |
| 3nuhB03 | 3.10.20.690 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 50.0 | 5.21e-01 | 78.8% | 92.1% |
| 4csdB00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.66 | 47.0 | 3.41e-01 | 74.7% | 33.7% |
| 2kc5A01 | 3.30.1460.40 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE | 0.64 | 46.0 | 4.20e-01 | 75.8% | 96.3% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.64 | 46.0 | 4.34e-01 | 83.8% | 63.2% |
| 7mhuA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.63 | 48.0 | 3.22e-01 | 80.8% | 54.2% |
| 3auxA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 45.0 | 3.07e-01 | 75.8% | 79.3% |
| 2l9pA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 45.0 | 3.85e-01 | 80.8% | 71.3% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 50.0 | 3.52e-01 | 93.9% | 95.5% |
| 3b5qA00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.58 | 50.0 | 3.28e-01 | 97.0% | 46.6% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.58 | 44.0 | 3.34e-01 | 83.8% | 32.0% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.58 | 42.0 | 2.87e-01 | 75.8% | 27.5% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 40.0 | 3.52e-01 | 70.7% | 92.9% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.56 | 33.0 | 3.42e-01 | 85.9% | 62.0% |
| 2leqA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 41.0 | 3.61e-01 | 75.8% | 73.3% |
| 3w2zA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 40.0 | 3.34e-01 | 74.7% | 91.0% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.56 | 40.0 | 2.81e-01 | 75.8% | 33.4% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.55 | 43.0 | 3.16e-01 | 83.8% | 31.9% |
| 1y6zA01 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 42.0 | 3.67e-01 | 82.8% | 71.2% |
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 36.0 | 3.28e-01 | 72.7% | 50.4% |
| 6zhhA01 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.53 | 45.0 | 3.72e-01 | 92.9% | 80.6% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 45.0 | 3.71e-01 | 97.0% | 83.0% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 38.0 | 3.94e-01 | 76.8% | 91.1% |
| 3ld7A00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.52 | 34.0 | 3.63e-01 | 78.8% | 77.0% |
| 2rbbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 36.0 | 3.39e-01 | 77.8% | 86.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002092 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.79 | 60.0 | 6.26e-01 | 79.8% | 98.9% |
| 3929502 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.73 | 43.0 | 4.46e-01 | 85.9% | 61.7% |
| 3633647 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.70 | 34.0 | 4.16e-01 | 72.7% | 70.8% |
| 4023269 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.66 | 38.0 | 3.73e-01 | 78.8% | 51.8% |
| 3242312 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 47.0 | 3.35e-01 | 76.8% | 50.7% |
| 4062329 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.64 | 46.0 | 4.51e-01 | 83.8% | 70.5% |
| 4295675 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.63 | 45.0 | 4.29e-01 | 83.8% | 61.7% |
| 4080135 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.63 | 45.0 | 4.16e-01 | 83.8% | 56.9% |
| 5051699 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.63 | 45.0 | 4.36e-01 | 83.8% | 67.3% |
| 4471221 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.62 | 44.0 | 4.21e-01 | 83.8% | 61.7% |
| 3974178 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.62 | 44.0 | 3.92e-01 | 83.8% | 51.0% |
| 5061484 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.62 | 44.0 | 4.25e-01 | 83.8% | 64.9% |
| 4391638 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.61 | 44.0 | 4.09e-01 | 83.8% | 59.2% |
| 1390452 | 2004.1.1.748 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B | 0.61 | 44.0 | 3.64e-01 | 75.8% | 67.6% |
| 4449431 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.61 | 44.0 | 4.07e-01 | 83.8% | 59.2% |
| 3519579 | 295.1.1.20 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 | 0.61 | 42.0 | 4.54e-01 | 81.8% | 88.7% |
| 5042099 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.61 | 44.0 | 4.17e-01 | 83.8% | 63.3% |
| 3260117 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.59 | 46.0 | 3.17e-01 | 83.8% | 24.2% |
| 3353407 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.59 | 45.0 | 3.14e-01 | 83.8% | 24.5% |
| 3822070 | 331.10.2.8 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox | 0.59 | 45.0 | 4.31e-01 | 83.8% | 70.4% |
| 2755883 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.59 | 41.0 | 4.22e-01 | 84.8% | 77.2% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.58 | 36.0 | 3.68e-01 | 81.8% | 63.2% |
| 5014513 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 51.0 | 4.57e-01 | 97.0% | 86.4% |
| 4768813 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.58 | 44.0 | 3.49e-01 | 83.8% | 37.3% |
| 3973638 | 331.10.1.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase | 0.57 | 44.0 | 3.44e-01 | 83.8% | 42.8% |
| 3730653 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 33.0 | 3.91e-01 | 72.7% | 84.3% |
| 3462090 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.56 | 40.0 | 2.82e-01 | 76.8% | 48.3% |
| 3939218 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.55 | 43.0 | 2.91e-01 | 81.8% | 64.4% |
| 3599120 | 331.10.1.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase | 0.55 | 43.0 | 2.96e-01 | 83.8% | 24.2% |
| 3616923 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.54 | 42.0 | 3.91e-01 | 80.8% | 81.7% |
| 3175498 | 5.1.4.332 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 | 0.53 | 39.0 | 2.67e-01 | 76.8% | 49.9% |
| 5024071 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 3.55e-01 | 97.0% | 62.6% |
| 3324335 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.53 | 44.0 | 3.68e-01 | 90.9% | 60.6% |
| 3991902 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 36.0 | 3.49e-01 | 83.8% | 62.7% |
| 3267754 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.52 | 36.0 | 3.34e-01 | 70.7% | 77.6% |
| 4030568 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.52 | 44.0 | 3.13e-01 | 94.9% | 96.1% |
| 4132512 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.51 | 42.0 | 3.00e-01 | 94.9% | 86.6% |