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LC765218.1__BEG72403.1__RVBP21_0310__00031

Bact-Vir

LC765218.1__BEG72403.1__RVBP21_0310__00031

Identity

Accession:
LC765218 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_BRkr

TaxID: 3040668

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-122
PDB
Domain cluster: rep: NC_007623.1__YP_418148.1__PPEV_gp115__00115__D16-134
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.67 38.0 4.64e-01 85.0% 92.2%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 56.0 4.76e-01 94.4% 92.4%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.62 38.0 3.80e-01 84.1% 57.4%
4cbpB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.35e-01 83.2% 74.0%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 4.64e-01 82.2% 85.7%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 4.70e-01 92.5% 85.4%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.59 41.0 4.19e-01 91.6% 74.8%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.59 44.0 4.84e-01 79.4% 98.8%
4kh9A03 2.60.120.1370 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 4.78e-01 90.7% 89.4%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 4.35e-01 84.1% 81.8%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.11e-01 92.5% 60.8%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.57 45.0 3.98e-01 86.0% 85.2%
7y9aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.24e-01 79.4% 87.4%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.57 48.0 4.74e-01 93.5% 94.9%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.66e-01 83.2% 88.5%
4cuaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.76e-01 84.1% 99.4%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.56 43.0 4.24e-01 83.2% 97.4%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 4.31e-01 83.2% 97.3%
3kd4A01 2.60.40.3140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.96e-01 100.0% 86.5%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 4.33e-01 91.6% 80.3%
3oq3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.25e-01 83.2% 85.4%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 4.31e-01 90.7% 98.4%
7nitA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.94e-01 92.5% 63.4%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 4.00e-01 87.9% 99.3%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.54 41.0 4.41e-01 85.0% 95.7%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.33e-01 84.1% 91.2%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 3.89e-01 79.4% 75.4%
4nzdB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.96e-01 78.5% 80.8%
5z06A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 45.0 3.84e-01 92.5% 83.2%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.93e-01 99.1% 99.5%
1nkgA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.53e-01 83.2% 98.3%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.37e-01 82.2% 55.6%
2zahA02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.88e-01 84.1% 93.8%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.71e-01 92.5% 56.9%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.86e-01 95.3% 70.6%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.90e-01 81.3% 86.8%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.98e-01 75.7% 90.2%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 4.19e-01 95.3% 88.3%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 4.13e-01 81.3% 95.5%
3u4kA00 2.60.40.3310 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.57e-01 85.0% 84.0%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.51 40.0 3.85e-01 92.5% 72.2%
3ibmB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 3.48e-01 89.7% 58.2%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.70e-01 86.0% 74.8%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.51 43.0 3.19e-01 94.4% 63.1%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.51 40.0 4.16e-01 86.0% 100.0%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 37.0 3.59e-01 85.0% 66.9%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.87e-01 92.5% 86.1%
1t4wA00 2.60.40.720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 45.0 3.71e-01 100.0% 89.3%
2zoeB02 2.60.120.1080 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.68e-01 92.5% 63.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227068 11.1.1.1085 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_IRG7_N 0.62 47.0 4.88e-01 91.6% 87.0%
3926824 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 4.48e-01 83.2% 68.9%
4943817 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 4.50e-01 84.1% 82.2%
3935362 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 43.0 4.42e-01 83.2% 76.2%
1714464 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 51.0 4.19e-01 94.4% 80.8%
3653564 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.60 51.0 4.00e-01 94.4% 69.4%
2507084 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.60 53.0 3.48e-01 100.0% 50.6%
3842840 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 41.0 4.07e-01 83.2% 67.0%
3406239 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 45.0 4.04e-01 83.2% 57.3%
3597601 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 50.0 4.73e-01 92.5% 98.5%
3478163 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.59 49.0 4.41e-01 92.5% 85.2%
5018863 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 47.0 4.74e-01 92.5% 87.6%
3203053 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.59 50.0 4.31e-01 94.4% 90.0%
4567712 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.58 44.0 4.20e-01 79.4% 92.8%
3492543 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.58 49.0 3.81e-01 92.5% 66.4%
3933059 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.58 45.0 4.42e-01 83.2% 81.7%
3497760 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.58 48.0 3.98e-01 92.5% 66.0%
1072214 10.36.1.1 ↗ beta sandwiches › jelly-roll › hypothetical protein lpg0956 N-terminal domain › hypothetical protein lpg0956 N-terminal domain › DUF4785_1st 0.58 48.0 4.31e-01 90.7% 67.3%
3860289 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.57 49.0 4.37e-01 94.4% 85.8%
3187876 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.57 49.0 3.74e-01 94.4% 59.4%
4626412 10.32.1.238 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.57 47.0 4.35e-01 90.7% 97.1%
3934401 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.30e-01 81.3% 78.2%
3232791 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.57 49.0 4.62e-01 96.3% 86.9%
1121 10.32.1.35 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YpM 0.57 48.0 4.74e-01 93.5% 94.9%
3402540 12.2.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Vanin_C 0.57 44.0 3.63e-01 84.1% 54.5%
3173715 4081.1.1.10 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Gpi16 0.57 48.0 3.93e-01 94.4% 63.9%
4349475 387.1.7.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold 0.57 25.0 3.46e-01 83.2% 93.2%
3265495 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 47.0 3.80e-01 92.5% 78.1%
5043233 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 4.68e-01 91.6% 94.0%
4263415 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.56 42.0 4.53e-01 85.0% 95.6%
3389387 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 42.0 3.96e-01 81.3% 67.4%
146198 4081.1.1.3 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF3857 0.55 48.0 3.96e-01 100.0% 86.5%
3996398 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 41.0 4.48e-01 85.0% 100.0%
3263196 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 44.0 3.96e-01 89.7% 61.3%
5035871 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 42.0 4.40e-01 88.8% 91.6%
4003859 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.55 46.0 3.80e-01 94.4% 65.4%
4301121 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.54 41.0 4.06e-01 80.4% 75.7%
3967103 10.47.1.0 ↗ beta sandwiches › jelly-roll › TssK C-terminal domain › TssK C-terminal domain 0.54 44.0 4.16e-01 88.8% 86.2%
5081928 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.54 36.0 3.98e-01 82.2% 85.9%
3612145 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.30e-01 99.1% 87.3%
3389402 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.14e-01 82.2% 83.5%
3792981 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 41.0 3.67e-01 80.4% 64.0%
5058285 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.54 40.0 4.25e-01 80.4% 93.3%
3473931 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.54 42.0 4.13e-01 84.1% 84.3%
5033863 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 42.0 3.80e-01 84.1% 87.6%
3267385 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.53 39.0 3.53e-01 78.5% 56.6%
4985560 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.53 38.0 4.17e-01 78.5% 96.5%
4059278 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.53 34.0 3.77e-01 76.6% 87.2%
4154798 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.53 40.0 4.04e-01 81.3% 94.5%
4024342 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.53 42.0 3.87e-01 92.5% 66.4%
3622115 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.52 42.0 3.65e-01 91.6% 55.8%
3973699 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.52 41.0 4.06e-01 86.0% 89.0%
3609251 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.26e-01 94.4% 82.5%
3165231 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.52 38.0 3.56e-01 85.0% 62.3%
3597519 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 42.0 4.14e-01 92.5% 81.7%
3285854 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.52 41.0 3.91e-01 85.0% 87.6%
2491470 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 40.0 3.56e-01 84.1% 98.1%
185565 11.1.5.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › MrkDrd 0.52 40.0 3.57e-01 85.0% 84.0%
3260848 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.69e-01 91.6% 57.7%
3609787 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.52 40.0 3.77e-01 84.1% 79.3%
3969999 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 35.0 3.21e-01 84.1% 51.7%
3989211 1.1.7.36 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_U32_C 0.51 39.0 3.95e-01 85.0% 80.9%
1174 10.32.1.70 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mann_GBD_bact 0.51 42.0 3.87e-01 92.5% 86.1%
3535490 10.32.1.195 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAAT-like 0.51 42.0 3.74e-01 92.5% 63.1%
5049153 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 37.0 3.58e-01 86.0% 68.3%
D2 medium residues 340-452
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 44.0 4.03e-01 77.9% 87.8%
3e7pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 48.0 3.66e-01 87.6% 94.1%
2i62A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 45.0 3.48e-01 82.3% 95.7%
3uj9A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.54e-01 86.7% 92.6%
2qe6A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 3.49e-01 87.6% 92.5%
3gwzA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.64e-01 91.2% 99.2%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.90e-01 94.7% 97.6%
3h2bB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 3.55e-01 81.4% 98.0%
7fbhB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.41e-01 85.0% 97.1%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 42.0 2.92e-01 85.0% 77.0%
2fpoC00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 48.0 4.08e-01 96.5% 99.4%
2esrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 3.67e-01 80.5% 84.4%
2ld4A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.70e-01 84.1% 91.3%
1ws6A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 46.0 4.03e-01 93.8% 100.0%
3i3wA01 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.53 40.0 3.64e-01 78.8% 66.2%
5gm2K01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.51e-01 88.5% 98.2%
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 44.0 4.06e-01 89.4% 90.3%
1h65B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.41e-01 91.2% 90.2%
2nxcA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 3.74e-01 83.2% 100.0%
4pcaB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.67e-01 95.6% 99.5%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.65e-01 94.7% 98.6%
5n6lA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 47.0 3.59e-01 100.0% 66.5%
3e8sA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.37e-01 85.8% 91.8%
4krgA02 3.40.50.12180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.46e-01 85.8% 97.1%
1a3wA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.52 42.0 3.82e-01 87.6% 85.8%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.63e-01 92.9% 97.0%
1zowA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 36.0 3.44e-01 74.3% 73.4%
3dtnA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.58e-01 89.4% 96.3%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 3.74e-01 87.6% 95.5%
2o3jB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.32e-01 85.8% 95.7%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 3.40e-01 81.4% 85.5%
2g1pB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.88e-01 90.3% 100.0%
3g5tA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.98e-01 85.8% 96.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689206 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 50.0 4.60e-01 83.2% 92.7%
3727039 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 52.0 3.95e-01 89.4% 59.3%
4536533 2003.1.5.89 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Anamorsin_N 0.61 47.0 4.41e-01 81.4% 98.6%
3509176 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.60 45.0 3.83e-01 77.9% 87.6%
3199749 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.58 47.0 3.94e-01 86.7% 81.4%
4161632 2003.1.5.55 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.57 49.0 4.10e-01 93.8% 97.9%
3663780 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 44.0 4.15e-01 81.4% 95.6%
None — 0.57 50.0 4.13e-01 97.3% 99.5%
4475713 2003.1.5.55 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.56 48.0 3.95e-01 93.8% 99.5%
3279726 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.56 50.0 4.22e-01 100.0% 93.7%
2795665 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 43.0 3.31e-01 86.7% 95.0%
4628817 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 42.0 3.42e-01 81.4% 74.4%
4949871 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 39.0 3.36e-01 76.1% 94.9%
3878685 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.54 44.0 3.78e-01 89.4% 77.8%
5064444 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.54 48.0 3.76e-01 100.0% 62.4%
3467154 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 44.0 3.82e-01 89.4% 85.1%
4210295 2003.1.5.32 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.53 47.0 3.95e-01 99.1% 100.0%
4086314 2003.1.5.293 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAD-bd_HRPKS_sdrA 0.53 41.0 2.81e-01 81.4% 39.0%
2674780 7519.1.1.1 ↗ a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.53 42.0 3.18e-01 85.0% 50.5%
3462526 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.53 47.0 3.80e-01 96.5% 90.5%
3825192 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.52 46.0 3.48e-01 97.3% 63.0%
3679783 7519.1.1.1 ↗ a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.52 41.0 3.09e-01 85.0% 52.6%
4396257 2003.1.5.84 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DRE2_N 0.52 39.0 3.77e-01 78.8% 95.2%
5045748 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 45.0 3.78e-01 94.7% 96.8%
3636898 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.51 41.0 3.62e-01 84.1% 76.9%
3451791 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 46.0 3.46e-01 96.5% 58.5%