←Back to structures
LC765218.1__BEG72662.1__RVBP21_2900__00290
Bact-VirLC765218.1__BEG72662.1__RVBP21_2900__00290
Identity
- Accession:
- LC765218 ↗
- Kingdom:
- phage
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-97
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pcoB04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.66 | 48.0 | 5.23e-01 | 97.9% | 94.7% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 38.0 | 4.15e-01 | 97.9% | 82.2% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 37.0 | 4.08e-01 | 92.6% | 87.1% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 38.0 | 3.82e-01 | 96.8% | 66.7% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.56 | 42.0 | 3.58e-01 | 80.9% | 96.8% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.55 | 36.0 | 3.31e-01 | 94.7% | 50.4% |
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.55 | 39.0 | 2.83e-01 | 74.5% | 34.9% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 36.0 | 3.97e-01 | 93.6% | 87.5% |
| 2yptA02 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.54 | 36.0 | 3.86e-01 | 94.7% | 80.2% |
| 1cl8A00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.51 | 44.0 | 3.26e-01 | 98.9% | 92.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4315777 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.67 | 40.0 | 3.55e-01 | 97.9% | 40.0% |
| 4668740 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 41.0 | 3.97e-01 | 96.8% | 58.1% |
| 4951627 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.60 | 29.0 | 3.29e-01 | 75.5% | 58.6% |
| 3943313 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.58 | 38.0 | 3.62e-01 | 94.7% | 55.7% |
| 4034325 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 37.0 | 3.42e-01 | 94.7% | 51.2% |
| 4197446 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 37.0 | 3.33e-01 | 95.7% | 47.4% |
| 1389189 | 3071.1.1.1 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage_GPD | 0.55 | 30.0 | 3.40e-01 | 97.9% | 72.3% |
| 3284686 | 101.1.9.84 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 | 0.55 | 38.0 | 2.87e-01 | 94.7% | 29.1% |
| 3351082 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.54 | 34.0 | 2.77e-01 | 92.6% | 31.7% |
| 3387860 | 7510.1.1.5 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA | 0.54 | 44.0 | 3.59e-01 | 94.7% | 91.5% |
| 4375035 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.53 | 37.0 | 3.56e-01 | 72.3% | 86.4% |
| 3290900 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.53 | 36.0 | 3.24e-01 | 94.7% | 49.2% |
| 5035764 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.52 | 36.0 | 3.50e-01 | 72.3% | 89.1% |
| 4020998 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.52 | 36.0 | 3.48e-01 | 71.3% | 81.0% |
| 11005 | 2008.1.1.9 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRI | 0.50 | 44.0 | 3.24e-01 | 98.9% | 92.3% |
| 3978574 | 3071.1.1.1 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage_GPD | 0.50 | 30.0 | 3.45e-01 | 98.9% | 84.6% |
| 4018225 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.50 | 41.0 | 2.97e-01 | 89.4% | 73.7% |