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LC765218.1__BEG72665.1__RVBP21_2930__00293

Bact-Vir

LC765218.1__BEG72665.1__RVBP21_2930__00293

Identity

Accession:
LC765218 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-37
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.66 46.0 4.47e-01 87.5% 63.4%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.66 49.0 3.51e-01 100.0% 25.8%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 48.0 2.83e-01 84.4% 69.7%
2p84A01 2.60.430.10 Mainly Beta › Sandwich › YopX-like fold › YopX-like domain 0.64 48.0 4.14e-01 90.6% 53.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.61 42.0 2.66e-01 75.0% 13.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 46.0 2.76e-01 100.0% 12.4%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 49.0 3.62e-01 96.9% 62.4%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.59 45.0 3.45e-01 100.0% 89.5%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 42.0 2.75e-01 84.4% 30.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.18e-01 96.9% 57.1%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 41.0 2.82e-01 100.0% 17.4%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 3.10e-01 100.0% 26.7%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.58 46.0 3.45e-01 100.0% 72.8%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.58 45.0 3.99e-01 100.0% 59.6%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.58 40.0 2.78e-01 84.4% 18.7%
1d5cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 41.0 2.69e-01 71.9% 13.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 43.0 3.20e-01 100.0% 64.9%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 40.0 2.97e-01 87.5% 21.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.37e-01 100.0% 37.7%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 43.0 2.76e-01 96.9% 72.6%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.57 42.0 2.55e-01 100.0% 10.4%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.57 42.0 2.97e-01 100.0% 41.5%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 40.0 2.90e-01 100.0% 23.3%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.28e-01 93.8% 33.7%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 38.0 2.78e-01 78.1% 20.2%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 44.0 2.82e-01 96.9% 33.7%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 43.0 3.21e-01 90.6% 60.0%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 2.61e-01 100.0% 84.7%
3vywA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 38.0 2.45e-01 100.0% 11.1%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 43.0 2.70e-01 100.0% 45.4%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.74e-01 100.0% 82.5%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 3.28e-01 100.0% 62.6%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 45.0 3.73e-01 100.0% 47.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 2.92e-01 100.0% 27.6%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.55 43.0 3.11e-01 100.0% 28.3%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 42.0 2.73e-01 81.2% 36.6%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 42.0 2.76e-01 100.0% 31.9%
1ldjA05 4.10.1030.10 Few Secondary Structures › Irregular › Ring Box Chain A; domain 5 › Ring Box Chain A; domain 5 0.54 38.0 2.96e-01 90.6% 32.4%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 40.0 2.42e-01 93.8% 86.4%
1wc1C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 42.0 2.62e-01 90.6% 60.4%
1v30A00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.53 37.0 2.81e-01 100.0% 26.3%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 39.0 2.64e-01 87.5% 39.0%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 2.54e-01 100.0% 24.0%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 2.57e-01 100.0% 23.8%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.51 41.0 3.10e-01 93.8% 70.9%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 2.92e-01 93.8% 64.2%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 2.55e-01 100.0% 81.6%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 37.0 2.27e-01 84.4% 70.0%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 2.57e-01 100.0% 60.1%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.58e-01 93.8% 33.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956777 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.75 53.0 3.90e-01 75.0% 32.5%
3932780 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.68 48.0 3.54e-01 100.0% 26.0%
3969345 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.67 48.0 2.90e-01 78.1% 34.1%
3305137 3569.1.1.0 extended segments › Epidermal growth factor receptor transmembrane-juxtamembrane segment-like › Epidermal growth factor receptor transmembrane-juxtamembrane segment › Epidermal growth factor receptor transmembrane-juxtamembrane segment 0.67 52.0 4.35e-01 100.0% 46.9%
3591994 304.103.1.0 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like 0.67 50.0 3.17e-01 90.6% 77.9%
3494759 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 3.40e-01 84.4% 73.9%
3373074 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.66 48.0 2.65e-01 100.0% 5.1%
5033504 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.65 49.0 2.91e-01 100.0% 10.4%
3588223 304.156.1.0 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain 0.62 50.0 3.65e-01 93.8% 33.3%
5066982 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.62 48.0 3.36e-01 100.0% 41.4%
3377656 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.62 44.0 2.50e-01 100.0% 5.7%
4024621 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.62 44.0 3.00e-01 100.0% 18.4%
4940657 101.1.2.269 alpha arrays › HTH › HTH › winged helix domain › SocA_Panacea 0.61 51.0 3.30e-01 100.0% 54.3%
4026870 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.61 45.0 3.32e-01 100.0% 27.3%
3299745 207.1.1.185 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6 0.61 43.0 2.53e-01 100.0% 7.6%
3381794 207.1.1.57 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.61 43.0 2.30e-01 100.0% 2.9%
5034188 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.60 46.0 2.78e-01 96.9% 19.3%
4948613 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.60 44.0 2.72e-01 100.0% 12.6%
5034133 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.60 46.0 2.70e-01 96.9% 17.1%
3381391 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.59 41.0 2.50e-01 100.0% 9.2%
4009409 109.4.1.2353 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N, TPR_2 0.59 44.0 2.55e-01 93.8% 7.5%
3186255 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.59 46.0 2.69e-01 100.0% 71.9%
3324101 207.1.1.47 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 0.59 42.0 2.46e-01 100.0% 7.6%
3220364 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.58 41.0 2.61e-01 93.8% 11.0%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 41.0 2.43e-01 84.4% 7.9%
3957133 7581.1.1.22 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.58 42.0 2.66e-01 96.9% 12.9%
3653375 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.58 40.0 3.82e-01 90.6% 55.0%
5002548 7512.1.1.18 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.57 44.0 2.40e-01 90.6% 10.8%
3989090 312.1.1.1 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf 0.57 42.0 2.66e-01 87.5% 13.7%
3673110 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.57 40.0 3.89e-01 100.0% 57.5%
3353299 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.57 46.0 2.87e-01 100.0% 84.1%
4791706 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.57 40.0 3.14e-01 75.0% 29.7%
3481511 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 39.0 3.12e-01 87.5% 32.0%
2037626 808.1.1.1 a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap 0.57 44.0 3.16e-01 96.9% 27.4%
4400357 312.1.1.21 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf, DUF4922 0.57 41.0 2.67e-01 87.5% 15.3%
5066425 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.56 40.0 3.25e-01 100.0% 32.5%
5055279 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.56 44.0 2.77e-01 93.8% 39.0%
3805332 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.56 44.0 2.70e-01 90.6% 30.0%
5062815 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.56 42.0 3.16e-01 100.0% 29.4%
4945261 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.55 43.0 2.98e-01 93.8% 46.9%
5068574 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 42.0 2.54e-01 96.9% 17.7%
4928584 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.55 41.0 2.58e-01 100.0% 26.7%
4401155 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.69e-01 100.0% 86.2%
3965667 109.4.1.520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N 0.54 40.0 2.31e-01 71.9% 5.7%
4413471 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.54 37.0 3.11e-01 100.0% 34.7%
5057738 312.1.1.0 a+b three layers › HIT-like › HIT-related › HIT-related 0.54 42.0 2.74e-01 90.6% 83.5%
3482243 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 40.0 3.45e-01 81.2% 43.6%
4297519 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.53 37.0 3.05e-01 75.0% 31.1%
4991405 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 39.0 2.24e-01 84.4% 63.2%
3479024 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.53 39.0 3.41e-01 81.2% 43.6%
4238490 812.2.1.1 a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.52 41.0 3.46e-01 100.0% 75.4%
4943839 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.52 36.0 2.34e-01 93.8% 12.2%
4483775 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.51 42.0 2.55e-01 90.6% 21.0%
4635715 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 2.66e-01 100.0% 49.4%
3166299 109.4.1.520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N 0.51 36.0 2.27e-01 93.8% 12.2%
4045503 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.51 35.0 3.03e-01 100.0% 38.7%
4029551 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.51 41.0 2.39e-01 100.0% 78.3%
4161112 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.51 41.0 2.58e-01 100.0% 61.4%