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LC765218.1__BEG72672.1__RVBP21_3000__00300

Bact-Vir

LC765218.1__BEG72672.1__RVBP21_3000__00300

Identity

Accession:
LC765218 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-91
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 45.0 3.99e-01 71.6% 87.6%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.65 50.0 4.67e-01 81.8% 89.0%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 49.0 4.21e-01 81.8% 64.5%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.64 50.0 3.99e-01 84.1% 68.9%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 48.0 4.22e-01 81.8% 91.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 47.0 4.04e-01 79.5% 93.6%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 43.0 2.95e-01 72.7% 42.4%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 47.0 4.11e-01 81.8% 88.1%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 47.0 4.16e-01 81.8% 89.8%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 48.0 4.27e-01 85.2% 68.8%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.60 42.0 3.45e-01 70.5% 69.3%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.60 46.0 3.72e-01 83.0% 79.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 44.0 3.70e-01 78.4% 95.5%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.60 45.0 3.12e-01 79.5% 84.2%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 50.0 4.35e-01 93.2% 85.5%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.58 47.0 3.45e-01 89.8% 37.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.58 43.0 3.84e-01 77.3% 89.3%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 3.91e-01 81.8% 90.6%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 45.0 4.02e-01 85.2% 90.8%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 44.0 3.87e-01 80.7% 84.6%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 42.0 3.47e-01 80.7% 89.5%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 4.11e-01 78.4% 86.3%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.57 44.0 3.58e-01 85.2% 88.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.56 46.0 4.46e-01 89.8% 90.0%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 45.0 4.14e-01 87.5% 89.1%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 4.71e-01 96.6% 100.0%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 42.0 3.54e-01 83.0% 94.2%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 3.86e-01 72.7% 80.0%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.55 43.0 3.17e-01 88.6% 35.6%
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.55 44.0 3.33e-01 88.6% 90.2%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.73e-01 88.6% 90.3%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 40.0 3.64e-01 81.8% 57.5%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.80e-01 81.8% 32.7%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.66e-01 94.3% 64.8%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.22e-01 88.6% 86.7%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.55e-01 97.7% 67.0%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.51e-01 100.0% 85.9%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 37.0 3.51e-01 70.5% 69.6%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.50e-01 95.5% 65.3%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.28e-01 88.6% 67.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.96e-01 97.7% 94.8%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.47e-01 95.5% 71.5%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.52 45.0 3.54e-01 100.0% 97.0%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 36.0 3.25e-01 70.5% 71.2%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 38.0 2.87e-01 78.4% 58.8%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.52 42.0 3.78e-01 95.5% 95.6%
3fkdA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 4.08e-01 100.0% 74.1%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.69e-01 79.5% 70.3%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.69e-01 95.5% 79.7%
1pzsA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.51 39.0 3.12e-01 80.7% 100.0%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 43.0 3.57e-01 96.6% 71.5%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.50 38.0 3.29e-01 80.7% 85.3%
4amwA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 36.0 3.11e-01 76.1% 73.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169853 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.69 37.0 3.81e-01 70.5% 54.1%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 52.0 4.58e-01 81.8% 72.2%
4466450 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.68 57.0 4.93e-01 93.2% 88.6%
5013018 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 52.0 4.55e-01 81.8% 86.9%
None 0.66 52.0 3.15e-01 84.1% 33.1%
3229011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 50.0 4.23e-01 80.7% 62.8%
4082107 7089.1.1.3 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.65 38.0 4.21e-01 70.5% 72.9%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.64 51.0 3.84e-01 85.2% 83.3%
3514491 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.64 43.0 2.76e-01 81.8% 15.9%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 4.34e-01 86.4% 81.4%
3519579 295.1.1.20 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.63 43.0 4.54e-01 83.0% 78.8%
4029635 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.63 50.0 4.34e-01 86.4% 89.9%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.62 57.0 3.85e-01 100.0% 76.8%
119302 3146.1.1.0 a+b complex topology › gH main domain › gH main domain › gH main domain 0.61 47.0 3.17e-01 81.8% 43.1%
5047088 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 46.0 3.43e-01 80.7% 55.9%
3603731 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 45.0 3.90e-01 79.5% 92.1%
5022798 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 41.0 2.57e-01 71.6% 15.1%
5014898 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 46.0 2.89e-01 80.7% 68.5%
4950432 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.59 49.0 3.79e-01 88.6% 85.8%
3385295 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 43.0 3.09e-01 76.1% 30.6%
3240866 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.58 45.0 4.32e-01 83.0% 91.0%
3264011 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.58 45.0 3.78e-01 85.2% 91.9%
3236186 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.58 40.0 3.98e-01 72.7% 78.9%
3666734 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.58 46.0 4.05e-01 85.2% 82.3%
3934558 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 45.0 2.92e-01 81.8% 39.4%
4961667 5084.1.1.45 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.57 43.0 4.00e-01 81.8% 94.8%
4310253 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.57 43.0 3.56e-01 81.8% 88.5%
3941130 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 44.0 2.93e-01 81.8% 85.5%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.57 42.0 3.87e-01 87.5% 61.8%
3283507 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.57 45.0 4.54e-01 86.4% 91.1%
4996269 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 49.0 3.71e-01 98.9% 95.6%
4968725 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.56 48.0 3.32e-01 96.6% 49.7%
5047554 241.1.1.5 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 0.56 43.0 3.60e-01 80.7% 84.7%
3247651 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 4.07e-01 79.5% 90.0%
2532545 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 42.0 2.89e-01 79.5% 62.7%
3311716 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.56 44.0 3.92e-01 86.4% 80.8%
4243201 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 47.0 3.68e-01 92.0% 62.7%
5028231 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.55 38.0 3.47e-01 70.5% 58.4%
3972685 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 45.0 3.87e-01 93.2% 92.0%
3277345 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.55 47.0 3.06e-01 96.6% 37.9%
1105421 12.1.1.14 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C 0.55 37.0 3.66e-01 70.5% 74.0%
3930230 331.4.1.5 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK 0.54 46.0 4.30e-01 98.9% 93.0%
3708710 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.54 42.0 2.43e-01 81.8% 24.4%
3286199 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 44.0 3.88e-01 94.3% 94.3%
3415161 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.54 45.0 3.28e-01 95.5% 37.8%
4023269 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 43.0 4.06e-01 88.6% 94.5%
4879580 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.54 39.0 3.29e-01 77.3% 81.7%
4939731 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 34.0 3.77e-01 75.0% 84.6%
3479461 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 46.0 3.55e-01 96.6% 78.0%
3604518 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.54 42.0 4.07e-01 86.4% 85.0%
4991973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 47.0 3.29e-01 96.6% 65.4%
3416070 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.73e-01 81.8% 76.1%
3820829 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.53 46.0 3.09e-01 92.0% 91.5%
4984607 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 45.0 4.47e-01 97.7% 96.8%
3492352 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 43.0 4.09e-01 89.8% 100.0%
3598079 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.70e-01 86.4% 93.3%
3458523 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.53 40.0 3.68e-01 80.7% 76.5%
3738183 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.53 44.0 3.93e-01 92.0% 78.4%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.53 41.0 3.89e-01 84.1% 92.4%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.52 41.0 2.65e-01 85.2% 82.0%
7054 881.2.1.1 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.52 41.0 3.75e-01 88.6% 98.4%
3540737 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 43.0 3.21e-01 88.6% 71.2%
3964888 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 40.0 3.10e-01 86.4% 51.4%
3463667 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.51 41.0 2.88e-01 92.0% 99.1%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.50 45.0 2.68e-01 100.0% 65.3%