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LC765218.1__BEG72675.1__RVBP21_3030__00303

Bact-Vir

LC765218.1__BEG72675.1__RVBP21_3030__00303

Identity

Accession:
LC765218 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k1yB02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.80 54.0 3.58e-01 70.1% 30.2%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.76 52.0 4.19e-01 71.6% 57.9%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.74 53.0 3.38e-01 79.1% 15.8%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.67 59.0 4.33e-01 98.5% 80.0%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 58.0 4.31e-01 100.0% 73.8%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 58.0 4.24e-01 97.0% 80.6%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 55.0 3.80e-01 100.0% 75.0%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.63 57.0 4.24e-01 100.0% 82.1%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 55.0 4.44e-01 100.0% 54.2%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.62 52.0 3.58e-01 91.0% 87.2%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.62 56.0 3.75e-01 100.0% 38.8%
3s6fA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 51.0 4.01e-01 91.0% 64.8%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.61 50.0 3.24e-01 86.6% 78.9%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 50.0 3.75e-01 91.0% 65.9%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 51.0 3.73e-01 92.5% 76.4%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 43.0 3.72e-01 74.6% 79.6%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 3.55e-01 86.6% 72.1%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.61 51.0 3.52e-01 92.5% 82.3%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 55.0 3.73e-01 100.0% 80.4%
3b5qA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.60 47.0 2.86e-01 85.1% 20.3%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.74e-01 88.1% 66.0%
5inhA04 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.59 51.0 3.37e-01 98.5% 90.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 47.0 4.09e-01 89.6% 79.8%
3tt2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 49.0 3.25e-01 97.0% 33.0%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 47.0 3.65e-01 91.0% 61.0%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.58 49.0 4.30e-01 100.0% 92.7%
4h5uA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 50.0 3.29e-01 100.0% 65.0%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 51.0 4.48e-01 100.0% 96.1%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 46.0 3.51e-01 91.0% 62.7%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 51.0 3.56e-01 100.0% 80.9%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.56 38.0 3.48e-01 100.0% 51.1%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 4.23e-01 98.5% 67.4%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 41.0 4.04e-01 91.0% 72.2%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 51.0 3.06e-01 100.0% 27.8%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.56 49.0 4.09e-01 100.0% 62.2%
1r57A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 4.02e-01 95.5% 60.8%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.55 33.0 3.51e-01 83.6% 66.7%
4h89A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.38e-01 91.0% 67.3%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 49.0 4.14e-01 100.0% 70.5%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 38.0 2.89e-01 73.1% 68.1%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 37.0 2.35e-01 71.6% 32.6%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.54 45.0 4.06e-01 97.0% 69.7%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 47.0 3.93e-01 100.0% 95.1%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.53 46.0 3.89e-01 100.0% 77.8%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.53 46.0 3.03e-01 100.0% 38.0%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.52 46.0 3.90e-01 98.5% 64.5%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 4.10e-01 100.0% 76.8%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 44.0 3.70e-01 98.5% 94.3%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.01e-01 95.5% 46.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 4.06e-01 100.0% 85.4%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 44.0 3.48e-01 100.0% 91.4%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 42.0 3.66e-01 95.5% 100.0%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 41.0 3.58e-01 100.0% 96.6%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3786070 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.80 54.0 3.47e-01 70.1% 22.8%
5017022 331.1.1.27 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS 0.73 58.0 3.79e-01 86.6% 20.7%
4976401 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.70 39.0 2.98e-01 97.0% 23.9%
4031984 3894.1.1.1 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.69 48.0 3.83e-01 71.6% 42.4%
3520790 3735.1.1.0 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.67 45.0 2.88e-01 70.1% 15.4%
5069690 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.67 46.0 4.71e-01 71.6% 98.5%
3455239 292.2.1.12 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Calmod_bind_C 0.66 45.0 4.70e-01 100.0% 78.3%
4544724 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.66 50.0 4.90e-01 83.6% 100.0%
5046362 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.66 53.0 3.49e-01 86.6% 57.8%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 54.0 4.14e-01 89.6% 99.3%
4332836 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 48.0 2.93e-01 82.1% 34.3%
3579842 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.63 50.0 3.03e-01 98.5% 15.1%
5046573 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.63 57.0 4.26e-01 100.0% 68.8%
4930899 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.63 49.0 4.65e-01 85.1% 86.3%
3460631 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 42.0 3.35e-01 100.0% 32.4%
3574435 386.1.1.18 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.63 34.0 3.84e-01 82.1% 68.6%
5075159 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.62 55.0 4.12e-01 98.5% 84.8%
3263745 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 55.0 4.12e-01 98.5% 65.2%
3239380 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.62 34.0 3.82e-01 82.1% 70.0%
2096155 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 51.0 3.58e-01 92.5% 82.8%
6630 241.1.1.4 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Chaperone_III 0.61 43.0 3.71e-01 74.6% 78.9%
3258463 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.70e-01 100.0% 77.3%
3318785 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.86e-01 82.1% 37.0%
3747900 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.59 51.0 2.98e-01 92.5% 19.2%
3511507 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.59 54.0 4.45e-01 100.0% 83.9%
3461115 207.1.1.103 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.59 45.0 2.97e-01 83.6% 29.0%
3964452 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 49.0 3.30e-01 92.5% 37.6%
3967100 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 51.0 3.53e-01 100.0% 41.7%
4124063 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.58 46.0 4.21e-01 92.5% 64.4%
3550365 331.23.1.2 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.57 46.0 4.48e-01 97.0% 80.8%
3172098 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.57 43.0 4.02e-01 85.1% 84.4%
3854547 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.57 53.0 4.25e-01 100.0% 62.5%
3259296 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 52.0 3.92e-01 100.0% 80.7%
3704178 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.56 44.0 2.72e-01 98.5% 14.8%
3599360 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.95e-01 92.5% 26.6%
3776367 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.56 52.0 3.53e-01 100.0% 40.5%
3938829 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 51.0 3.09e-01 100.0% 24.5%
3309356 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 2.84e-01 89.6% 33.4%
3222419 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 44.0 4.27e-01 89.6% 80.0%
4518121 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.55 45.0 3.96e-01 98.5% 60.0%
3777243 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.55 51.0 3.95e-01 100.0% 58.5%
5009633 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 50.0 4.54e-01 100.0% 84.4%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 46.0 3.74e-01 100.0% 84.3%
3233381 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.54 49.0 3.09e-01 100.0% 26.2%
5010773 12.3.1.74 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.54 45.0 3.08e-01 91.0% 29.1%
5079687 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 49.0 3.01e-01 100.0% 24.5%
3199835 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.43e-01 100.0% 84.0%
3478678 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 49.0 4.74e-01 100.0% 90.7%
3236833 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 42.0 2.85e-01 89.6% 47.5%
3707830 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 43.0 2.87e-01 94.0% 43.6%
3198165 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 47.0 2.97e-01 100.0% 28.2%
3575284 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.52 48.0 4.37e-01 98.5% 90.6%
3645923 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 47.0 2.92e-01 100.0% 27.4%
3279135 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 46.0 2.98e-01 100.0% 30.5%
3223920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 32.0 3.16e-01 77.6% 57.3%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 38.0 4.12e-01 85.1% 100.0%
3579989 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.50 47.0 2.87e-01 100.0% 36.7%
3222982 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.50 42.0 3.38e-01 100.0% 100.0%