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LC765218.1__BEG72687.1__RVBP21_3150__00315

Bact-Vir

LC765218.1__BEG72687.1__RVBP21_3150__00315

Identity

Accession:
LC765218 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_BRkr

TaxID: 3040668

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
Domain cluster: rep: MT811961.1__QNI21044.1__X__00098__D3-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20287.4 best SH3DP 122.8 8.50e-36 96.8% 73.8%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 45.0 5.09e-01 96.8% 77.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 5.56e-01 100.0% 83.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 44.0 4.96e-01 96.8% 76.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 44.0 5.10e-01 98.9% 82.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 5.19e-01 97.9% 91.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 5.25e-01 94.7% 91.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 36.0 4.78e-01 96.8% 97.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 45.0 5.28e-01 95.7% 96.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 5.31e-01 100.0% 98.4%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 34.0 4.37e-01 86.2% 89.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.65e-01 100.0% 80.2%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 35.0 4.28e-01 84.0% 89.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 35.0 4.31e-01 92.6% 92.9%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 35.0 4.18e-01 86.2% 85.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 38.0 4.29e-01 94.7% 85.7%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 29.0 3.99e-01 89.4% 91.8%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 4.52e-01 94.7% 95.5%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 38.0 4.40e-01 93.6% 95.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.11e-01 97.9% 80.8%
3vcxA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 28.0 3.53e-01 90.4% 79.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 35.0 4.06e-01 94.7% 95.5%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.30e-01 81.9% 61.8%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 27.0 3.36e-01 86.2% 82.1%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 42.0 3.77e-01 100.0% 64.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 43.0 5.56e-01 94.7% 92.7%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 48.0 5.86e-01 100.0% 96.7%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 42.0 5.40e-01 88.3% 90.9%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.79 44.0 4.53e-01 94.7% 57.8%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.77 45.0 5.15e-01 95.7% 78.3%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.77 46.0 4.53e-01 97.9% 56.0%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 47.0 5.40e-01 100.0% 84.3%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 45.0 5.36e-01 97.9% 87.5%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 41.0 5.38e-01 93.6% 100.0%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.76 45.0 4.40e-01 97.9% 54.4%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 44.0 5.14e-01 96.8% 83.1%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 43.0 4.53e-01 94.7% 62.4%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 43.0 5.11e-01 94.7% 83.1%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 46.0 5.25e-01 100.0% 82.9%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 44.0 5.18e-01 95.7% 84.6%
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 45.0 5.06e-01 100.0% 80.0%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 37.0 4.69e-01 79.8% 79.3%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 43.0 5.40e-01 96.8% 98.2%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.74 45.0 4.98e-01 100.0% 76.0%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 42.0 5.08e-01 93.6% 88.3%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.73 44.0 4.67e-01 100.0% 67.1%
5052257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 40.0 4.84e-01 95.7% 85.0%
4071917 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.72 40.0 5.08e-01 95.7% 100.0%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.71 47.0 5.49e-01 96.8% 96.9%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.71 41.0 4.88e-01 95.7% 84.6%
3927411 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 35.0 4.65e-01 76.6% 100.0%
3991073 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 35.0 4.44e-01 76.6% 83.6%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.68 39.0 4.86e-01 95.7% 96.4%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 39.0 4.18e-01 94.7% 66.3%
3214162 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 33.0 3.99e-01 78.7% 76.7%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 38.0 4.58e-01 92.6% 95.0%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 39.0 4.49e-01 95.7% 85.7%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 39.0 4.41e-01 94.7% 84.3%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.62 42.0 4.58e-01 98.9% 86.7%
3246255 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 38.0 4.30e-01 94.7% 82.9%
4940372 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 33.0 3.84e-01 80.9% 72.9%
5068388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 32.0 4.08e-01 81.9% 87.3%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 5.07e-01 98.9% 98.8%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 36.0 4.23e-01 92.6% 96.6%
4031199 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.59 42.0 4.45e-01 93.6% 86.3%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.58 47.0 4.96e-01 94.7% 98.8%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 41.0 4.64e-01 92.6% 100.0%
3224441 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 4.03e-01 93.6% 85.3%
3475807 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 42.0 4.47e-01 100.0% 95.0%
4350601 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.54 38.0 3.37e-01 74.5% 64.7%
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.50 46.0 4.13e-01 100.0% 86.2%