←Back to structures
LC765218.1__BEG72724.1__RVBP21_3520__00352
Bact-VirLC765218.1__BEG72724.1__RVBP21_3520__00352
Identity
- Accession:
- LC765218 ↗
- Kingdom:
- phage
Quality
93.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-95
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 42.0 | 4.42e-01 | 81.0% | 79.2% |
| 3fxhA00 | 1.20.120.600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall | 0.60 | 52.0 | 4.27e-01 | 100.0% | 88.5% |
| 5mmjm02 | 4.10.910.10 | Few Secondary Structures › Irregular › 30s ribosomal protein s13; domain 2 › Ribosomal protein S13/S18, C-terminal domain | 0.59 | 27.0 | 3.13e-01 | 70.7% | 56.1% |
| 4nphA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 38.0 | 3.59e-01 | 79.3% | 59.5% |
| 2yevA03 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.54 | 44.0 | 3.27e-01 | 100.0% | 91.3% |
| 1iufA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 44.0 | 4.34e-01 | 98.3% | 98.4% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 3.34e-01 | 75.9% | 71.6% |
| 4mx8C01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 40.0 | 2.84e-01 | 87.9% | 74.1% |
| 2iusA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 2.81e-01 | 100.0% | 46.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261055 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.60 | 48.0 | 3.10e-01 | 87.9% | 26.0% |
| 3693269 | 101.1.1.207 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF6581 | 0.52 | 41.0 | 3.53e-01 | 100.0% | 60.0% |
| 3297791 | 109.4.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB | 0.51 | 44.0 | 2.68e-01 | 100.0% | 40.0% |
| 3744750 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.51 | 38.0 | 2.54e-01 | 84.5% | 92.0% |