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LC765218.1__BEG72757.1__RVBP21_3850__00385

Bact-Vir

LC765218.1__BEG72757.1__RVBP21_3850__00385

Identity

Accession:
LC765218 ↗
Kingdom:
phage

Quality

58.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-104
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ejnA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.88 68.0 4.70e-01 92.4% 27.4%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.80 73.0 5.02e-01 100.0% 52.2%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 58.0 5.14e-01 78.8% 55.4%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 53.0 4.30e-01 71.2% 38.7%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.77 57.0 5.25e-01 78.8% 62.2%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.77 68.0 5.67e-01 100.0% 61.2%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 68.0 5.87e-01 100.0% 83.2%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 48.0 4.50e-01 72.7% 51.8%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.75 57.0 4.72e-01 80.3% 52.2%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.75 67.0 5.69e-01 100.0% 61.3%
2x19B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.75 64.0 3.50e-01 100.0% 6.7%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 67.0 5.78e-01 100.0% 80.6%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.75 66.0 5.59e-01 100.0% 91.8%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 68.0 5.45e-01 100.0% 83.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.75 51.0 4.69e-01 71.2% 60.0%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.74 64.0 5.04e-01 93.9% 71.4%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.74 65.0 5.33e-01 100.0% 54.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.73 63.0 6.01e-01 100.0% 84.8%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.73 62.0 4.95e-01 95.5% 74.8%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.72 64.0 5.33e-01 100.0% 83.8%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.72 59.0 4.94e-01 90.9% 58.6%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 61.0 5.85e-01 100.0% 84.0%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 63.0 4.56e-01 100.0% 53.8%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.71 63.0 5.61e-01 100.0% 82.1%
3gonA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.71 58.0 4.46e-01 86.4% 51.5%
7powA01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.70 61.0 4.36e-01 100.0% 32.8%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.70 61.0 5.67e-01 100.0% 97.6%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.68 60.0 5.15e-01 93.9% 74.0%
3ceqA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 52.0 3.53e-01 98.5% 22.0%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.68 58.0 4.94e-01 100.0% 71.8%
4ecgA00 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.68 58.0 3.70e-01 100.0% 36.1%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.68 56.0 4.92e-01 95.5% 60.2%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 59.0 4.91e-01 100.0% 70.3%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 52.0 5.03e-01 98.5% 74.7%
2xrhA00 1.20.120.1430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle 0.67 51.0 4.49e-01 100.0% 55.0%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 53.0 5.44e-01 100.0% 92.1%
2jvgA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.66 51.0 5.04e-01 100.0% 77.8%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.66 58.0 4.49e-01 95.5% 69.8%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.66 51.0 4.81e-01 100.0% 69.0%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 51.0 4.56e-01 98.5% 58.8%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.64 49.0 5.17e-01 100.0% 100.0%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.63 56.0 5.21e-01 100.0% 86.7%
1d9cA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 50.0 4.10e-01 100.0% 47.9%
1cgnA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.61 54.0 4.41e-01 100.0% 81.5%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.60 52.0 4.04e-01 100.0% 55.2%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.57 49.0 4.23e-01 100.0% 68.5%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 40.0 4.17e-01 98.5% 100.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056430 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.95 85.0 8.31e-01 100.0% 88.6%
3895496 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.84 76.0 4.69e-01 100.0% 19.1%
4024734 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.80 65.0 4.84e-01 89.4% 40.6%
3706056 604.22.1.0 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain 0.79 71.0 6.45e-01 100.0% 75.3%
3871867 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.77 69.0 5.29e-01 97.0% 68.6%
5063672 109.10.1.0 alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.77 64.0 4.61e-01 97.0% 33.5%
3895157 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 54.0 4.31e-01 89.4% 39.2%
4102845 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.76 68.0 5.56e-01 100.0% 72.5%
3974221 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.75 66.0 5.34e-01 100.0% 66.9%
3608864 109.4.1.592 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N 0.75 65.0 3.77e-01 100.0% 23.1%
3616031 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 70.0 6.13e-01 100.0% 82.1%
3737856 196.1.1.1 alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.75 66.0 4.89e-01 93.9% 53.5%
4031805 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 66.0 5.55e-01 97.0% 92.7%
3693073 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 61.0 5.39e-01 89.4% 63.2%
3518225 109.4.1.292 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.75 66.0 4.03e-01 100.0% 15.8%
3309583 604.12.1.65 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT_ATG1 0.75 64.0 6.06e-01 95.5% 86.3%
5049145 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 68.0 5.89e-01 100.0% 83.8%
5013248 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.74 66.0 5.33e-01 98.5% 63.2%
3964643 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.74 66.0 5.59e-01 100.0% 69.1%
4782662 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.74 67.0 4.56e-01 100.0% 30.5%
4409486 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.74 65.0 4.36e-01 100.0% 61.9%
3504889 604.22.1.1 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N 0.73 64.0 5.92e-01 100.0% 84.7%
3578466 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 66.0 6.23e-01 100.0% 85.0%
3755802 604.12.1.98 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NKAIN 0.73 66.0 5.60e-01 100.0% 80.0%
4234961 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.73 65.0 5.31e-01 100.0% 75.8%
4056285 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.73 61.0 5.41e-01 100.0% 64.2%
4270503 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.73 60.0 5.55e-01 100.0% 71.8%
4848264 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 59.0 5.33e-01 98.5% 65.2%
4474310 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.72 61.0 5.70e-01 100.0% 76.2%
4000800 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.72 61.0 4.59e-01 95.5% 40.0%
2157267 109.4.1.204 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ 0.72 64.0 5.33e-01 100.0% 59.5%
4088690 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.72 60.0 5.63e-01 100.0% 76.2%
165995 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 61.0 5.85e-01 100.0% 84.0%
4289855 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.71 60.0 6.07e-01 100.0% 93.8%
4969381 601.13.1.0 alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS 0.71 64.0 5.41e-01 100.0% 66.4%
3591222 604.1.1.198 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › BAG 0.71 60.0 5.37e-01 95.5% 76.8%
3231844 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.71 62.0 5.26e-01 93.9% 98.1%
3629231 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.71 63.0 3.56e-01 100.0% 9.6%
3722545 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.71 61.0 3.97e-01 100.0% 23.5%
3502048 601.24.1.0 alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 0.71 63.0 5.58e-01 100.0% 83.2%
5032368 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 59.0 6.02e-01 98.5% 95.4%
3385709 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.70 58.0 5.40e-01 100.0% 71.8%
3686422 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.70 55.0 4.85e-01 100.0% 56.2%
3222039 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.70 62.0 3.55e-01 100.0% 10.9%
5078844 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 58.0 5.52e-01 95.5% 77.5%
4290271 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.70 57.0 5.22e-01 100.0% 67.8%
3940649 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 60.0 5.67e-01 100.0% 81.2%
5024703 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.69 59.0 4.36e-01 100.0% 74.2%
5024797 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 57.0 5.81e-01 97.0% 95.4%
3545594 109.4.1.256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Insc_C 0.69 62.0 5.20e-01 100.0% 81.8%
4321884 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.68 56.0 5.01e-01 100.0% 65.6%
4193935 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.68 56.0 5.17e-01 100.0% 71.8%
4996707 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 59.0 5.59e-01 100.0% 87.5%
4063100 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.66 55.0 5.17e-01 100.0% 76.2%
3583102 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 56.0 5.35e-01 100.0% 86.3%
3696125 109.4.1.177 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 0.66 56.0 3.58e-01 100.0% 47.3%
3463790 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 55.0 4.32e-01 98.5% 58.6%
4953182 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.62 53.0 3.97e-01 98.5% 84.4%
5023287 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 49.0 4.86e-01 98.5% 85.7%
3545962 192.8.1.247 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Erf4 0.56 49.0 3.91e-01 97.0% 89.2%