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LC768465.1__BEH84184.1__X__00232
Bact-VirLC768465.1__BEH84184.1__X__00232
Identity
- Accession:
- LC768465 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Slopekvirus›
Klebsiella_phage_phiKp_4
TaxID: 2979961
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-57_128-176
Domain cluster:
rep: NC_054727.1__YP_010059746.1__KHQ87_gp057__00057__D884-917_974-1007
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qhxA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 70.0 | 5.27e-01 | 100.0% | 72.5% |
| 1zu4A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 64.0 | 4.61e-01 | 92.3% | 72.5% |
| 5veoA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.72 | 60.0 | 4.13e-01 | 92.3% | 77.9% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 56.0 | 4.44e-01 | 87.2% | 84.0% |
| 3tauA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 53.0 | 4.37e-01 | 89.7% | 47.4% |
| 4kfuA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 53.0 | 3.88e-01 | 84.6% | 34.1% |
| 1dbqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 51.0 | 4.27e-01 | 85.9% | 47.8% |
| 3d3qA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 54.0 | 4.32e-01 | 88.5% | 86.4% |
| 2bonA01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.66 | 53.0 | 4.47e-01 | 87.2% | 69.5% |
| 3rf7A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 53.0 | 4.02e-01 | 89.7% | 77.9% |
| 3igzB01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.65 | 53.0 | 3.57e-01 | 89.7% | 77.7% |
| 1rkbA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 59.0 | 4.53e-01 | 100.0% | 60.7% |
| 1p9lA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 44.0 | 3.67e-01 | 88.5% | 39.9% |
| 6yv8A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.64 | 53.0 | 3.82e-01 | 91.0% | 90.0% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.64 | 54.0 | 3.90e-01 | 94.9% | 91.7% |
| 3zokA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 55.0 | 4.26e-01 | 97.4% | 80.5% |
| 5t3uB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.62 | 49.0 | 4.14e-01 | 85.9% | 51.9% |
| 2zyhA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 52.0 | 3.82e-01 | 93.6% | 86.7% |
| 1tq8A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 50.0 | 4.28e-01 | 89.7% | 73.2% |
| 1gvhA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.61 | 48.0 | 3.96e-01 | 84.6% | 90.8% |
| 2fh5B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 48.0 | 3.74e-01 | 89.7% | 63.8% |
| 7lgnB03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.61 | 47.0 | 3.93e-01 | 84.6% | 65.9% |
| 3mtqB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.61 | 47.0 | 3.89e-01 | 85.9% | 47.4% |
| 3iprA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.60 | 47.0 | 3.92e-01 | 85.9% | 48.2% |
| 4tkzA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.60 | 44.0 | 3.77e-01 | 84.6% | 47.7% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 47.0 | 3.53e-01 | 87.2% | 50.5% |
| 2qtfA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 49.0 | 3.92e-01 | 93.6% | 86.2% |
| 4m98A01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 4.62e-01 | 89.7% | 78.4% |
| 3hgmA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 48.0 | 3.91e-01 | 92.3% | 83.7% |
| 6h0cA02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.57 | 49.0 | 3.99e-01 | 97.4% | 81.6% |
| 1pdoA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.57 | 44.0 | 3.79e-01 | 87.2% | 51.9% |
| 3nbkD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 48.0 | 3.92e-01 | 100.0% | 89.6% |
| 2wteA01 | 3.40.50.11700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 45.0 | 3.84e-01 | 92.3% | 89.1% |
| 5agaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 3.37e-01 | 88.5% | 61.4% |
| 3ej7H00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 35.0 | 4.00e-01 | 98.7% | 92.6% |
| 2kbeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 3.24e-01 | 89.7% | 38.9% |
| 1f6bB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 49.0 | 3.71e-01 | 97.4% | 83.3% |
| 2ynmD01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 44.0 | 3.60e-01 | 88.5% | 49.7% |
| 1gyxA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 35.0 | 3.80e-01 | 97.4% | 81.2% |
| 3u61C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 3.52e-01 | 92.3% | 74.1% |
| 4gywA05 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 43.0 | 3.42e-01 | 88.5% | 68.9% |
| 4qarA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.53 | 48.0 | 3.55e-01 | 98.7% | 89.7% |
| 1hyeA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.63e-01 | 92.3% | 59.2% |
| 3ej3C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 36.0 | 3.89e-01 | 98.7% | 87.5% |
| 3m20A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 35.0 | 3.84e-01 | 100.0% | 91.5% |
| 6ogmD00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 38.0 | 4.14e-01 | 98.7% | 98.4% |
| 4fdxB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 39.0 | 4.21e-01 | 100.0% | 96.9% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.62e-01 | 93.6% | 80.5% |
| 1r3nG01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 42.0 | 2.87e-01 | 93.6% | 65.0% |
| 5djsA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 39.0 | 3.20e-01 | 87.2% | 80.4% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 36.0 | 3.82e-01 | 100.0% | 88.1% |
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.50 | 36.0 | 3.90e-01 | 100.0% | 95.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4023933 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.73 | 60.0 | 4.36e-01 | 91.0% | 87.3% |
| 3590516 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.72 | 50.0 | 4.40e-01 | 87.2% | 50.9% |
| 5063868 | 2004.1.1.101 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MeaB | 0.69 | 57.0 | 3.82e-01 | 87.2% | 25.9% |
| 4069073 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.68 | 54.0 | 4.88e-01 | 85.9% | 65.7% |
| 4977255 | 2007.22.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D | 0.66 | 51.0 | 4.37e-01 | 91.0% | 52.0% |
| 3428798 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.65 | 52.0 | 3.74e-01 | 87.2% | 30.0% |
| 4959864 | 2007.22.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D › FlpD | 0.65 | 51.0 | 4.36e-01 | 91.0% | 52.8% |
| 3406075 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.64 | 51.0 | 3.99e-01 | 85.9% | 57.0% |
| 3291259 | 7516.1.1.26 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 | 0.63 | 54.0 | 3.38e-01 | 96.2% | 84.7% |
| 1575356 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.63 | 49.0 | 4.43e-01 | 85.9% | 79.3% |
| None | — | 0.63 | 54.0 | 4.01e-01 | 97.4% | 84.5% | |
| 4517210 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.62 | 55.0 | 3.77e-01 | 97.4% | 87.9% |
| 1907442 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.62 | 49.0 | 4.12e-01 | 85.9% | 51.9% |
| 1005394 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.62 | 49.0 | 4.56e-01 | 87.2% | 84.3% |
| 4976000 | 2003.1.8.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like | 0.62 | 51.0 | 4.65e-01 | 89.7% | 80.0% |
| 5069788 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 50.0 | 3.29e-01 | 88.5% | 24.3% |
| 3503196 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.61 | 47.0 | 3.45e-01 | 85.9% | 30.2% |
| 3969499 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.60 | 52.0 | 4.24e-01 | 100.0% | 76.8% |
| 4999793 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.60 | 38.0 | 4.38e-01 | 93.6% | 100.0% |
| 3307296 | 7512.1.1.33 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 | 0.60 | 43.0 | 3.45e-01 | 75.6% | 53.2% |
| 3606667 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.59 | 47.0 | 3.25e-01 | 88.5% | 26.2% |
| 3587924 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.58 | 46.0 | 3.80e-01 | 88.5% | 85.3% |
| 4678704 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.58 | 50.0 | 3.65e-01 | 100.0% | 68.1% |
| 4972541 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.58 | 46.0 | 3.86e-01 | 87.2% | 49.6% |
| 4932680 | 2004.1.1.1065 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › YGR210-like_G4 | 0.57 | 49.0 | 3.29e-01 | 96.2% | 38.5% |
| 1698349 | 7512.1.1.33 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 | 0.57 | 41.0 | 3.00e-01 | 74.4% | 39.0% |
| 5036585 | 7515.1.1.8 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Metalloenzyme | 0.57 | 48.0 | 3.51e-01 | 94.9% | 39.1% |
| 4948133 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.57 | 40.0 | 4.34e-01 | 100.0% | 90.8% |
| 5032033 | 2006.1.3.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › OLD-like_TOPRIM | 0.56 | 44.0 | 3.77e-01 | 88.5% | 67.4% |
| 5032778 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.56 | 38.0 | 4.19e-01 | 98.7% | 91.7% |
| 3272687 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.56 | 41.0 | 3.02e-01 | 79.5% | 85.4% |
| 4011463 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.55 | 44.0 | 3.45e-01 | 88.5% | 87.7% |
| 4399680 | 7512.1.1.33 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 | 0.55 | 43.0 | 2.71e-01 | 83.3% | 56.4% |
| 4013078 | 7512.1.1.54 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 | 0.55 | 45.0 | 3.32e-01 | 97.4% | 80.8% |
| 3382039 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 42.0 | 3.37e-01 | 85.9% | 39.4% |
| 3170678 | 2007.2.3.14 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Init_tRNA_PT | 0.54 | 41.0 | 3.19e-01 | 83.3% | 77.2% |
| 3300468 | 2003.1.10.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Ins134_P3_kin_N | 0.54 | 38.0 | 3.61e-01 | 89.7% | 59.0% |
| 4122147 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.53 | 36.0 | 3.65e-01 | 98.7% | 72.0% |
| 3482973 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 45.0 | 3.39e-01 | 97.4% | 94.6% |
| 5072268 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.53 | 36.0 | 4.06e-01 | 98.7% | 93.3% |
| 140487 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.53 | 35.0 | 3.84e-01 | 100.0% | 91.5% |
D2
high
residues 59-121
Domain cluster:
rep: NC_049340.1__YP_009873871.1__HYO65_gp187__00187__D397-448
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.66 | 56.0 | 4.29e-01 | 93.7% | 86.8% |
| 7vw6B01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.64 | 44.0 | 4.42e-01 | 96.8% | 70.1% |
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.63 | 45.0 | 3.14e-01 | 77.8% | 21.7% |
| 2byvE03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 45.0 | 3.27e-01 | 76.2% | 27.4% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 49.0 | 4.53e-01 | 87.3% | 75.0% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 43.0 | 3.25e-01 | 76.2% | 29.8% |
| 3k1zA02 | 1.10.150.720 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase | 0.61 | 52.0 | 4.80e-01 | 98.4% | 78.6% |
| 6wb9201 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 44.0 | 2.86e-01 | 79.4% | 19.0% |
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 43.0 | 3.91e-01 | 77.8% | 84.5% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 48.0 | 4.44e-01 | 100.0% | 75.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 48.0 | 4.53e-01 | 98.4% | 81.5% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 40.0 | 3.59e-01 | 100.0% | 50.0% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 40.0 | 3.07e-01 | 76.2% | 55.6% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.56 | 44.0 | 4.15e-01 | 87.3% | 79.5% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.56 | 39.0 | 3.48e-01 | 85.7% | 50.0% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.55 | 45.0 | 3.78e-01 | 88.9% | 88.2% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 39.0 | 3.56e-01 | 76.2% | 89.8% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.55 | 40.0 | 3.05e-01 | 77.8% | 68.2% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.55 | 40.0 | 3.24e-01 | 77.8% | 91.9% |
| 3kd6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 41.0 | 2.64e-01 | 81.0% | 85.7% |
| 3we9A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 46.0 | 3.17e-01 | 100.0% | 40.1% |
| 2rijA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 3.31e-01 | 96.8% | 45.2% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.52 | 42.0 | 3.42e-01 | 93.7% | 47.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 46.0 | 3.86e-01 | 100.0% | 89.0% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 39.0 | 3.61e-01 | 81.0% | 65.0% |
| 3evyA00 | 1.20.58.910 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 38.0 | 3.54e-01 | 81.0% | 85.5% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.51 | 41.0 | 3.34e-01 | 87.3% | 70.9% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.51 | 40.0 | 3.52e-01 | 87.3% | 82.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3348499 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.63 | 42.0 | 3.57e-01 | 79.4% | 43.0% |
| 3991144 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 53.0 | 4.78e-01 | 100.0% | 68.9% |
| 1395085 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.62 | 46.0 | 3.15e-01 | 81.0% | 35.8% |
| 4937529 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.61 | 52.0 | 4.59e-01 | 100.0% | 66.0% |
| 3619616 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 48.0 | 4.43e-01 | 90.5% | 71.8% |
| 3838525 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.60 | 49.0 | 3.51e-01 | 100.0% | 30.0% |
| 3599158 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 43.0 | 2.96e-01 | 77.8% | 20.9% |
| 4034213 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.58 | 40.0 | 3.67e-01 | 71.4% | 67.5% |
| 4537299 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.58 | 51.0 | 3.16e-01 | 100.0% | 20.5% |
| 4169130 | 102.1.1.5 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY | 0.58 | 42.0 | 3.90e-01 | 98.4% | 58.9% |
| 4599610 | 102.1.1.5 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY | 0.56 | 43.0 | 3.84e-01 | 98.4% | 56.8% |
| 3687243 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.60e-01 | 100.0% | 90.0% |
| 5003779 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 49.0 | 3.23e-01 | 100.0% | 63.8% |
| 3480773 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.55 | 45.0 | 3.09e-01 | 95.2% | 25.3% |
| 4021216 | 627.1.1.0 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain | 0.55 | 45.0 | 4.07e-01 | 100.0% | 90.5% |
| 3370265 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.54 | 43.0 | 3.44e-01 | 88.9% | 55.4% |
| 4531271 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.54 | 45.0 | 3.53e-01 | 100.0% | 76.7% |
| 4028663 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.54 | 44.0 | 3.79e-01 | 100.0% | 54.8% |
| 4635167 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.54 | 45.0 | 3.81e-01 | 100.0% | 67.8% |
| 4033037 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.54 | 37.0 | 3.57e-01 | 71.4% | 71.4% |
| 4031490 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.53 | 39.0 | 3.72e-01 | 77.8% | 73.3% |
| 3344640 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.17e-01 | 88.9% | 58.2% |
| 4636592 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.53 | 45.0 | 3.52e-01 | 100.0% | 74.5% |
| 4182059 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.52 | 44.0 | 3.76e-01 | 100.0% | 75.5% |
| 3912101 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.52 | 40.0 | 3.45e-01 | 84.1% | 76.0% |
| 4031192 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.51 | 36.0 | 3.53e-01 | 74.6% | 81.4% |
| 4976933 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.51 | 40.0 | 3.26e-01 | 90.5% | 62.2% |
| 5079385 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.51 | 42.0 | 3.39e-01 | 95.2% | 93.3% |
| 3615985 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 41.0 | 3.39e-01 | 87.3% | 77.3% |
| 3475712 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.50 | 43.0 | 4.16e-01 | 95.2% | 87.1% |
| 3506685 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.50 | 40.0 | 3.86e-01 | 88.9% | 77.3% |